RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 DCUN1D5Q9BTE7 237 aa5.61□□□□□ -1.51
LIMA1-202ENST00000394943 DPAGT1Q9H3H5 408 aa5.61□□□□□ -1.51
LIMA1-202ENST00000394943 RAB18Q9NP72 206 aa5.61□□□□□ -1.51
LIMA1-202ENST00000394943 SIRT7Q9NRC8 400 aa5.61□□□□□ -1.51
LIMA1-202ENST00000394943 COMMD9Q9P000 198 aa5.61□□□□□ -1.51
LIMA1-202ENST00000394943 FAM25AB3EWG3 89 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 FAM25CB3EWG5 89 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 FAM25GB3EWG6 89 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 UPK1BO75841 260 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 SLC6A1P30531 599 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 HRH1P35367 487 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 FBLN7Q53RD9 439 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 RUSC1-AS1Q66K80 236 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 FAM53AQ6NSI3 398 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-202ENST00000394943 TGIF2LXQ8IUE1 241 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 ZNF383Q8NA42 475 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 TERB2Q8NHR7 220 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 MYOZ3Q8TDC0 251 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 SLC25A21Q9BQT8 299 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-202ENST00000394943 SRSF8Q9BRL6 282 aaKnown RBP5.6□□□□□ -1.51
LIMA1-202ENST00000394943 C6orf62Q9GZU0 229 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-202ENST00000394943 TBC1D24Q9ULP9 559 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 DNAJC9-AS1A6NH13 148 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 FCER2P06734 321 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 PTHLHP12272 177 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 IL7P13232 177 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 ARPC4P59998 168 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 SPANXN2Q5MJ10 180 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 Q8N402 240 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 DRAM1Q8N682 238 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 OR4C16Q8NGL9 310 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 PRRT1Q99946 306 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 CHMP1AQ9HD42 196 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-202ENST00000394943 NSD1Q96L73 2696 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-202ENST00000394943 A0A0B4J2A0 478 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 A0A1W2PRD5 423 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 A0A1W2PRF3 423 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 A0A1W2PRM7 423 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 CD3DP04234 171 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 RPA2P15927 270 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 MRPS15P82914 257 aaKnown RBP5.6□□□□□ -1.51
LIMA1-202ENST00000394943 FAM131AQ6UXB0 335 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 SIGLECL1Q8N7X8 197 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 C5orf56Q8N8D9 126 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 OR2AK2Q8NG84 335 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 OR5H2Q8NGV7 314 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 OSR1Q8TAX0 266 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-202ENST00000394943 IFT46Q9NQC8 304 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 SHPKQ9UHJ6 478 aa5.6□□□□□ -1.51
LIMA1-202ENST00000394943 TRAV39A0A0B4J263 110 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 DUXBA0A1W2PPF3 345 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 CRYM-AS1A6NIL9 109 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 HLA-DRB1P01911 266 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 IGF1P05019 195 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 HKR1P10072 659 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 SSBP2P81877 361 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-202ENST00000394943 IFITM3Q01628 133 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 IL18Q14116 193 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 TMEM56Q96MV1 263 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 BEX2Q9BXY8 128 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 TMEM56-RWDD3S4R434 201 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 USF3Q68DE3 2245 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 A0A1B0GUS0 222 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 H0Y980 276 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 TOR1AO14656 332 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 ST8SIA5O15466 376 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 NDUFB6O95139 128 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 SLC25A6P12236 298 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 MAS1LP35410 378 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 LGALS7P47929 136 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 DIAPH2-AS1Q14236 149 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 ZNF818PQ6ZRF7 136 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 Q8N9W7 124 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 TEX45Q8NA69 505 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 OR4D10Q8NGI6 311 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 CD300LFQ8TDQ1 290 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 NEK7Q8TDX7 302 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 TMEM230Q96A57 120 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 ST6GALNAC5Q9BVH7 336 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 PLEKHA2Q9HB19 425 aa5.59□□□□□ -1.51
LIMA1-202ENST00000394943 LIN7CQ9NUP9 197 aaKnown RBP5.59□□□□□ -1.51
LIMA1-202ENST00000394943 FLNAP21333 2647 aaKnown RBP5.59□□□□□ -1.52
LIMA1-202ENST00000394943 DISC1C4P0D8 188 aa5.59□□□□□ -1.52
LIMA1-202ENST00000394943 GPR31O00270 319 aa5.59□□□□□ -1.52
LIMA1-202ENST00000394943 TCF21O43680 179 aa5.59□□□□□ -1.52
LIMA1-202ENST00000394943 PGLYRP1O75594 196 aaPredicted RBP5.59□□□□□ -1.52
LIMA1-202ENST00000394943 MOSP00540 346 aa5.59□□□□□ -1.52
LIMA1-202ENST00000394943 OMGP23515 440 aa5.59□□□□□ -1.52
LIMA1-202ENST00000394943 UCP1P25874 307 aa5.59□□□□□ -1.52
LIMA1-202ENST00000394943 FCGR2CP31995 323 aa5.59□□□□□ -1.52
LIMA1-202ENST00000394943 RAB13P51153 203 aa5.59□□□□□ -1.52
LIMA1-202ENST00000394943 TAS2R31P59538 309 aa5.59□□□□□ -1.52
LIMA1-202ENST00000394943 UBE2KP61086 200 aa5.59□□□□□ -1.52
LIMA1-202ENST00000394943 ZNF585BQ52M93 769 aa5.59□□□□□ -1.52
LIMA1-202ENST00000394943 GCDHQ92947 438 aaPredicted RBP5.59□□□□□ -1.52
LIMA1-202ENST00000394943 TINAGL1Q9GZM7 467 aaPredicted RBP5.59□□□□□ -1.52
LIMA1-202ENST00000394943 MS4A7Q9GZW8 240 aaPredicted RBP5.59□□□□□ -1.52
LIMA1-202ENST00000394943 ZNF702PQ9H963 129 aa5.59□□□□□ -1.52
LIMA1-202ENST00000394943 BET1LQ9NYM9 111 aa5.59□□□□□ -1.52
LIMA1-202ENST00000394943 PITPNC1Q9UKF7 332 aa5.59□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms