RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 LCATP04180 440 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 VDAC1P21796 283 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 AADACP22760 399 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 UCP1P25874 307 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 OTX1P32242 354 aaPredicted RBP9.47□□□□□ -0.89
CUX1-204ENST00000393824 HERV-K104P61576 105 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 SERF2P84101 59 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 OR8B8Q15620 311 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 GCNT2Q8N0V5 402 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 ZCCHC14Q8WYQ9 949 aaKnown RBP9.47□□□□□ -0.89
CUX1-204ENST00000393824 MS4A10Q96PG2 267 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 ALKBH3Q96Q83 286 aaPredicted RBP9.47□□□□□ -0.89
CUX1-204ENST00000393824 YPEL2Q96QA6 119 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 RBKSQ9H477 322 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 GPR35Q9HC97 309 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 UBE2J1Q9Y385 318 aaPredicted RBP9.47□□□□□ -0.89
CUX1-204ENST00000393824 SHANK1Q9Y566 2161 aa9.46□□□□□ -0.89
CUX1-204ENST00000393824 PPYP01298 95 aa9.46□□□□□ -0.9
CUX1-204ENST00000393824 SELEP16581 610 aa9.46□□□□□ -0.9
CUX1-204ENST00000393824 FAHP16930 419 aa9.46□□□□□ -0.9
CUX1-204ENST00000393824 MSR1P21757 451 aa9.46□□□□□ -0.9
CUX1-204ENST00000393824 GNRHRP30968 328 aa9.46□□□□□ -0.9
CUX1-204ENST00000393824 RANP62826 216 aaKnown RBP9.46□□□□□ -0.9
CUX1-204ENST00000393824 C10orf128Q5T292 105 aa9.46□□□□□ -0.9
CUX1-204ENST00000393824 TEX43Q6ZNM6 134 aa9.46□□□□□ -0.9
CUX1-204ENST00000393824 PIGTQ969N2 578 aa9.46□□□□□ -0.9
CUX1-204ENST00000393824 ABHD17AQ96GS6 310 aa9.46□□□□□ -0.9
CUX1-204ENST00000393824 TAAR6Q96RI8 345 aa9.46□□□□□ -0.9
CUX1-204ENST00000393824 ELOVL1Q9BW60 279 aa9.46□□□□□ -0.9
CUX1-204ENST00000393824 OR2J1Q9GZK6 312 aa9.46□□□□□ -0.9
CUX1-204ENST00000393824 OR51I2Q9H344 312 aa9.46□□□□□ -0.9
CUX1-204ENST00000393824 PIGLQ9Y2B2 252 aa9.46□□□□□ -0.9
CUX1-204ENST00000393824 IGHV3-15A0A0B4J1V0 119 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 NKX6-3A6NJ46 265 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 AQP7P3A6NL99 342 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 PPBPP02775 128 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 SRD5A2P31213 254 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 CEACAM8P31997 349 aaPredicted RBP9.45□□□□□ -0.9
CUX1-204ENST00000393824 FGF8P55075 233 aaPredicted RBP9.45□□□□□ -0.9
CUX1-204ENST00000393824 GFRA1P56159 465 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 UBE2NP61088 152 aaKnown RBP9.45□□□□□ -0.9
CUX1-204ENST00000393824 SELENOTP62341 195 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 MEF2BQ02080 365 aaPredicted RBP9.45□□□□□ -0.9
CUX1-204ENST00000393824 RNPS1Q15287 305 aaKnown RBP9.45□□□□□ -0.9
CUX1-204ENST00000393824 C3AR1Q16581 482 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 PRSS8Q16651 343 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 VSIRQ9H7M9 311 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 RPH3ALQ9UNE2 315 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 CFAP46Q8IYW2 2715 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 MYO7BQ6PIF6 2116 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 A0A0J9YW62 118 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 C20orf202A1L168 122 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 ZNF705FA8MVS1 300 aaPredicted RBP9.45□□□□□ -0.9
CUX1-204ENST00000393824 TNFSF11O14788 317 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 ZNF737O75373 536 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 HLA-HP01893 362 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 FAM87AP0C7U9 286 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 ZNF705DP0CH99 300 aaPredicted RBP9.45□□□□□ -0.9
CUX1-204ENST00000393824 ZNF705BP0CI00 300 aaPredicted RBP9.45□□□□□ -0.9
CUX1-204ENST00000393824 CD46P15529 392 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 MDH2P40926 338 aaKnown RBP9.45□□□□□ -0.9
CUX1-204ENST00000393824 WNT5AP41221 380 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 KLF3P57682 345 aaPredicted RBP9.45□□□□□ -0.9
CUX1-204ENST00000393824 RPL15P61313 204 aaKnown RBP9.45□□□□□ -0.9
CUX1-204ENST00000393824 MRPS34P82930 218 aaKnown RBP9.45□□□□□ -0.9
CUX1-204ENST00000393824 TBR1Q16650 682 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 COL5A1-AS1Q5SY13 56 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 NUFIP2Q7Z417 695 aaKnown RBP9.45□□□□□ -0.9
CUX1-204ENST00000393824 TBC1D26Q86UD7 250 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 GGNQ86UU5 652 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 RBMXL3Q8N7X1 1067 aaKnown RBP9.45□□□□□ -0.9
CUX1-204ENST00000393824 SCGB1C1Q8TD33 95 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 PINX1Q96BK5 328 aaKnown RBP9.45□□□□□ -0.9
CUX1-204ENST00000393824 BTF3L4Q96K17 158 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 UCN2Q96RP3 112 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 RSG1Q9BU20 258 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 SRXN1Q9BYN0 137 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 DEFB127Q9H1M4 99 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 MSL2Q9HCI7 577 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 ZNF71Q9NQZ8 489 aaPredicted RBP9.45□□□□□ -0.9
CUX1-204ENST00000393824 TMEM106BQ9NUM4 274 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 AURKAIP1Q9NWT8 199 aaPredicted RBP9.45□□□□□ -0.9
CUX1-204ENST00000393824 ZNF581Q9P0T4 197 aa9.45□□□□□ -0.9
CUX1-204ENST00000393824 IFNL4K9M1U5 179 aa9.44□□□□□ -0.9
CUX1-204ENST00000393824 CARD17Q5XLA6 110 aa9.44□□□□□ -0.9
CUX1-204ENST00000393824 C11orf42Q8N5U0 333 aa9.44□□□□□ -0.9
CUX1-204ENST00000393824 BOKQ9UMX3 212 aaPredicted RBP9.44□□□□□ -0.9
CUX1-204ENST00000393824 KLF13Q9Y2Y9 288 aaPredicted RBP9.44□□□□□ -0.9
CUX1-204ENST00000393824 NDUFS8O00217 210 aa9.44□□□□□ -0.9
CUX1-204ENST00000393824 LILRA1O75019 489 aa9.44□□□□□ -0.9
CUX1-204ENST00000393824 PLGLB1Q02325 96 aa9.44□□□□□ -0.9
CUX1-204ENST00000393824 ENDOGQ14249 297 aaKnown RBP9.44□□□□□ -0.9
CUX1-204ENST00000393824 CNN3Q15417 329 aaKnown RBP9.44□□□□□ -0.9
CUX1-204ENST00000393824 TMEM211Q6ICI0 200 aa9.44□□□□□ -0.9
CUX1-204ENST00000393824 VHLLQ6RSH7 139 aa9.44□□□□□ -0.9
CUX1-204ENST00000393824 TMEM256Q8N2U0 113 aa9.44□□□□□ -0.9
CUX1-204ENST00000393824 IL22RA2Q969J5 263 aa9.44□□□□□ -0.9
CUX1-204ENST00000393824 TMEM54Q969K7 222 aa9.44□□□□□ -0.9
CUX1-204ENST00000393824 SPTSSAQ969W0 71 aa9.44□□□□□ -0.9
CUX1-204ENST00000393824 SDSLQ96GA7 329 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms