RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 FAM90A13PP0C7W8 464 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 FAM90A14PP0C7W9 464 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 FAM90A24PP0C7X0 464 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 B3GALT5-AS1P59052 145 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 OR2T10Q8NGZ9 312 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 SPSB4Q96A44 273 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 PINX1Q96BK5 328 aaKnown RBP11.61□□□□□ -0.55
USP49-201ENST00000373006 MS4A10Q96PG2 267 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 TECTBQ96PL2 329 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 PRRG4Q9BZD6 226 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 ASCL3Q9NQ33 180 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 SELENOKQ9Y6D0 94 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 TRAV24A0A0B4J272 114 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 GJE1A6NN92 205 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 TOX3O15405 576 aaPredicted RBP11.6□□□□□ -0.55
USP49-201ENST00000373006 LILRA1O75019 489 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 HPRT1P00492 218 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 UMODP07911 640 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 CEACAM6P40199 344 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 FOXG1P55316 489 aaPredicted RBP11.6□□□□□ -0.55
USP49-201ENST00000373006 CEACAM21Q3KPI0 293 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 ZNF585BQ52M93 769 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 TMEM256Q8N2U0 113 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 BEND2Q8NDZ0 799 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 REPIN1Q9BWE0 567 aaKnown RBP11.6□□□□□ -0.55
USP49-201ENST00000373006 LPAR2Q9HBW0 351 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 POLR3KQ9Y2Y1 108 aaPredicted RBP11.6□□□□□ -0.55
USP49-201ENST00000373006 IGHV3-64DA0A0J9YX35 117 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 C1QTNF9BB2RNN3 333 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 PAGE4O60829 102 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 GYPAP02724 150 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 HNF1AP20823 631 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 PTTG1IPP53801 180 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 COA6Q5JTJ3 125 aaKnown RBP11.6□□□□□ -0.55
USP49-201ENST00000373006 SVIPQ8NHG7 77 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 VN1R17PQ8TDU5 208 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 IMMP1LQ96LU5 166 aa11.6□□□□□ -0.55
USP49-201ENST00000373006 FAM103A1Q9BTL3 118 aaKnown RBP11.6□□□□□ -0.55
USP49-201ENST00000373006 UBE2ZQ9H832 354 aaPredicted RBP11.6□□□□□ -0.55
USP49-201ENST00000373006 B4E171 279 aa11.59□□□□□ -0.55
USP49-201ENST00000373006 COX6A1P12074 109 aa11.59□□□□□ -0.55
USP49-201ENST00000373006 CD82P27701 267 aa11.59□□□□□ -0.55
USP49-201ENST00000373006 MRPS11P82912 194 aaKnown RBP11.59□□□□□ -0.55
USP49-201ENST00000373006 SRSF7Q16629 238 aaKnown RBP eCLIP11.59□□□□□ -0.55
USP49-201ENST00000373006 TGIF2LYQ8IUE0 185 aa11.59□□□□□ -0.55
USP49-201ENST00000373006 ACY3Q96HD9 319 aa11.59□□□□□ -0.55
USP49-201ENST00000373006 ARF1P84077 181 aaKnown RBP11.59□□□□□ -0.55
USP49-201ENST00000373006 ST6GALNAC3Q8NDV1 305 aa11.59□□□□□ -0.55
USP49-201ENST00000373006 OR10G9Q8NGN4 311 aa11.59□□□□□ -0.55
USP49-201ENST00000373006 OR10G7Q8NGN6 311 aa11.59□□□□□ -0.55
USP49-201ENST00000373006 AGMATQ9BSE5 352 aa11.59□□□□□ -0.55
USP49-201ENST00000373006 PRDM14Q9GZV8 571 aa11.59□□□□□ -0.55
USP49-201ENST00000373006 RHBDL1O75783 438 aa11.59□□□□□ -0.55
USP49-201ENST00000373006 SLC25A6P12236 298 aa11.59□□□□□ -0.55
USP49-201ENST00000373006 SRYQ05066 204 aa11.59□□□□□ -0.55
USP49-201ENST00000373006 ACTL10Q5JWF8 245 aa11.59□□□□□ -0.55
USP49-201ENST00000373006 FAM78BQ5VT40 261 aa11.59□□□□□ -0.55
USP49-201ENST00000373006 FGFRL1Q8N441 504 aa11.59□□□□□ -0.55
USP49-201ENST00000373006 OR1L6Q8NGR2 347 aa11.59□□□□□ -0.55
USP49-201ENST00000373006 OR6C3Q9NZP0 311 aa11.59□□□□□ -0.55
USP49-201ENST00000373006 ZNF503-AS2A6NEH8 195 aa11.58□□□□□ -0.56
USP49-201ENST00000373006 NUPR1O60356 82 aa11.58□□□□□ -0.56
USP49-201ENST00000373006 KRASP01116 189 aa11.58□□□□□ -0.56
USP49-201ENST00000373006 CCL4P13236 92 aa11.58□□□□□ -0.56
USP49-201ENST00000373006 CEACAM8P31997 349 aaPredicted RBP11.58□□□□□ -0.56
USP49-201ENST00000373006 OR5P3Q8WZ94 311 aa11.58□□□□□ -0.56
USP49-201ENST00000373006 TMEM9BQ9NQ34 198 aa11.58□□□□□ -0.56
USP49-201ENST00000373006 PRDM6Q9NQX0 595 aa11.58□□□□□ -0.56
USP49-201ENST00000373006 DLL3Q9NYJ7 618 aa11.58□□□□□ -0.56
USP49-201ENST00000373006 CLN8Q9UBY8 286 aa11.58□□□□□ -0.56
USP49-201ENST00000373006 CRYAAP02489 173 aa11.58□□□□□ -0.56
USP49-201ENST00000373006 PDLIM4P50479 330 aa11.58□□□□□ -0.56
USP49-201ENST00000373006 COLCA1Q6ZS62 124 aa11.58□□□□□ -0.56
USP49-201ENST00000373006 LSM10Q969L4 123 aaKnown RBP11.58□□□□□ -0.56
USP49-201ENST00000373006 PGPEP1LA6NFU8 196 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 SPINK9Q5DT21 86 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 R3HDM4Q96D70 268 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 PHF7Q9BWX1 381 aaPredicted RBP11.57□□□□□ -0.56
USP49-201ENST00000373006 NAGKQ9UJ70 344 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 HEATR1Q9H583 2144 aaKnown RBP11.57□□□□□ -0.56
USP49-201ENST00000373006 TMEM250H0YL14 139 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 NPPCP23582 126 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 CNN1P51911 297 aaKnown RBP11.57□□□□□ -0.56
USP49-201ENST00000373006 TFF3Q07654 80 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 MMDQ15546 238 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 FFAR4Q5NUL3 377 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 CENPVQ7Z7K6 275 aaPredicted RBP11.57□□□□□ -0.56
USP49-201ENST00000373006 ZNF709Q8N972 641 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 SH2D2AQ9NP31 389 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 TTC28Q96AY4 2481 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 ASPMQ8IZT6 3477 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 ZNF320A2RRD8 509 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 SIRPB1O00241 398 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 TNRC18O15417 2968 aaPredicted RBP11.57□□□□□ -0.56
USP49-201ENST00000373006 RAMP3O60896 148 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 MRPL33O75394 65 aaKnown RBP11.57□□□□□ -0.56
USP49-201ENST00000373006 KLF7O75840 302 aaPredicted RBP11.57□□□□□ -0.56
USP49-201ENST00000373006 PDGFBP01127 241 aaPredicted RBP11.57□□□□□ -0.56
USP49-201ENST00000373006 P04436 131 aa11.57□□□□□ -0.56
USP49-201ENST00000373006 UBE2G2P60604 165 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms