RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 BRWD1-AS2P59051 145 aa16.2■□□□□ 0.18
COL9A3-201ENST00000343916 SMIM21Q3B7S5 101 aa16.2■□□□□ 0.18
COL9A3-201ENST00000343916 VSIRQ9H7M9 311 aa16.2■□□□□ 0.18
COL9A3-201ENST00000343916 EGR1P18146 543 aa16.19■□□□□ 0.18
COL9A3-201ENST00000343916 P2RY6Q15077 328 aa16.19■□□□□ 0.18
COL9A3-201ENST00000343916 SPRNQ5BIV9 151 aa16.19■□□□□ 0.18
COL9A3-201ENST00000343916 SOHLH1Q5JUK2 328 aa16.19■□□□□ 0.18
COL9A3-201ENST00000343916 NCMAPQ5T1S8 102 aa16.19■□□□□ 0.18
COL9A3-201ENST00000343916 ATMQ13315 3056 aa16.19■□□□□ 0.18
COL9A3-201ENST00000343916 RNF212BA8MTL3 300 aa16.19■□□□□ 0.18
COL9A3-201ENST00000343916 C17orf98A8MV24 154 aa16.19■□□□□ 0.18
COL9A3-201ENST00000343916 S1PR2O95136 353 aa16.19■□□□□ 0.18
COL9A3-201ENST00000343916 NBL1P41271 181 aa16.19■□□□□ 0.18
COL9A3-201ENST00000343916 UBE2KP61086 200 aa16.19■□□□□ 0.18
COL9A3-201ENST00000343916 HNF4GQ14541 408 aa16.19■□□□□ 0.18
COL9A3-201ENST00000343916 SP5Q6BEB4 398 aaPredicted RBP16.19■□□□□ 0.18
COL9A3-201ENST00000343916 ZNF525Q8N782 197 aa16.19■□□□□ 0.18
COL9A3-201ENST00000343916 PRR7Q8TB68 274 aa16.19■□□□□ 0.18
COL9A3-201ENST00000343916 KIAA1456Q9P272 454 aa16.19■□□□□ 0.18
COL9A3-201ENST00000343916 MMP24Q9Y5R2 645 aa16.19■□□□□ 0.18
COL9A3-201ENST00000343916 A0A1B0GW64 132 aa16.18■□□□□ 0.18
COL9A3-201ENST00000343916 MBD3L4A6NDZ8 208 aaPredicted RBP16.18■□□□□ 0.18
COL9A3-201ENST00000343916 MBD3L3A6NE82 208 aaPredicted RBP16.18■□□□□ 0.18
COL9A3-201ENST00000343916 MBD3L5A6NJ08 208 aaPredicted RBP16.18■□□□□ 0.18
COL9A3-201ENST00000343916 RHEBQ15382 184 aa16.18■□□□□ 0.18
COL9A3-201ENST00000343916 MBD3L2Q8NHZ7 208 aaPredicted RBP16.18■□□□□ 0.18
COL9A3-201ENST00000343916 TCTEX1D2Q8WW35 142 aa16.18■□□□□ 0.18
COL9A3-201ENST00000343916 SMG1Q96Q15 3661 aaKnown RBP16.18■□□□□ 0.18
COL9A3-201ENST00000343916 TRBV23-1A0A0A0MS06 115 aa16.18■□□□□ 0.18
COL9A3-201ENST00000343916 K7EM74 188 aa16.18■□□□□ 0.18
COL9A3-201ENST00000343916 ST8SIA5O15466 376 aa16.18■□□□□ 0.18
COL9A3-201ENST00000343916 EIF4EBP1Q13541 118 aaPredicted RBP16.18■□□□□ 0.18
COL9A3-201ENST00000343916 VHLLQ6RSH7 139 aa16.18■□□□□ 0.18
COL9A3-201ENST00000343916 ZNF474Q6S9Z5 364 aaPredicted RBP16.18■□□□□ 0.18
COL9A3-201ENST00000343916 BEND4Q6ZU67 534 aa16.18■□□□□ 0.18
COL9A3-201ENST00000343916 LILRB2Q8N423 598 aa16.18■□□□□ 0.18
COL9A3-201ENST00000343916 KDF1Q8NAX2 398 aaPredicted RBP16.18■□□□□ 0.18
COL9A3-201ENST00000343916 S100PBPQ96BU1 408 aa16.18■□□□□ 0.18
COL9A3-201ENST00000343916 COL25A1Q9BXS0 654 aaPredicted RBP16.18■□□□□ 0.18
COL9A3-201ENST00000343916 M0R1B8 84 aa16.17■□□□□ 0.18
COL9A3-201ENST00000343916 ATXN7O15265 892 aaPredicted RBP16.17■□□□□ 0.18
COL9A3-201ENST00000343916 TLE4Q04727 773 aa16.17■□□□□ 0.18
COL9A3-201ENST00000343916 OR8G2PQ6IF36 304 aa16.17■□□□□ 0.18
COL9A3-201ENST00000343916 SCGB1C1Q8TD33 95 aa16.17■□□□□ 0.18
COL9A3-201ENST00000343916 RPRMQ9NS64 109 aa16.17■□□□□ 0.18
COL9A3-201ENST00000343916 FAM215AQ9Y5M1 114 aa16.17■□□□□ 0.18
COL9A3-201ENST00000343916 SPTBN2O15020 2390 aa16.17■□□□□ 0.18
COL9A3-201ENST00000343916 GVINP1Q7Z2Y8 2422 aa16.17■□□□□ 0.18
COL9A3-201ENST00000343916 CLDN1O95832 211 aa16.17■□□□□ 0.18
COL9A3-201ENST00000343916 RPS23P62266 143 aaKnown RBP16.17■□□□□ 0.18
COL9A3-201ENST00000343916 TNFRSF9Q07011 255 aa16.17■□□□□ 0.18
COL9A3-201ENST00000343916 IGF2-ASQ6U949 168 aa16.17■□□□□ 0.18
COL9A3-201ENST00000343916 TCEAL7Q9BRU2 100 aa16.17■□□□□ 0.18
COL9A3-201ENST00000343916 OR51M1Q9H341 326 aa16.17■□□□□ 0.18
COL9A3-201ENST00000343916 RBKSQ9H477 322 aa16.17■□□□□ 0.18
COL9A3-201ENST00000343916 PSG11Q9UQ72 335 aa16.17■□□□□ 0.18
COL9A3-201ENST00000343916 IGHV3OR15-7A0A075B7D8 119 aa16.16■□□□□ 0.18
COL9A3-201ENST00000343916 LINC00473A8K010 186 aa16.16■□□□□ 0.18
COL9A3-201ENST00000343916 AP4M1O00189 453 aa16.16■□□□□ 0.18
COL9A3-201ENST00000343916 TM4SF5O14894 197 aa16.16■□□□□ 0.18
COL9A3-201ENST00000343916 PRDX2P32119 198 aa16.16■□□□□ 0.18
COL9A3-201ENST00000343916 PLA2G5P39877 138 aa16.16■□□□□ 0.18
COL9A3-201ENST00000343916 ICAM4Q14773 271 aa16.16■□□□□ 0.18
COL9A3-201ENST00000343916 FAM180AQ6UWF9 173 aa16.16■□□□□ 0.18
COL9A3-201ENST00000343916 ODAMA1E959 279 aa16.16■□□□□ 0.18
COL9A3-201ENST00000343916 BTBD17A6NE02 478 aa16.16■□□□□ 0.18
COL9A3-201ENST00000343916 IFNL4K9M1U5 179 aa16.16■□□□□ 0.18
COL9A3-201ENST00000343916 OR2C1O95371 312 aa16.16■□□□□ 0.18
COL9A3-201ENST00000343916 TUBG1P23258 451 aa16.16■□□□□ 0.18
COL9A3-201ENST00000343916 Q3ZCU0 254 aa16.16■□□□□ 0.18
COL9A3-201ENST00000343916 CYB561D1Q8N8Q1 229 aa16.16■□□□□ 0.18
COL9A3-201ENST00000343916 ZBTB34Q8NCN2 500 aa16.16■□□□□ 0.18
COL9A3-201ENST00000343916 CLDND2Q8NHS1 167 aa16.16■□□□□ 0.18
COL9A3-201ENST00000343916 TUBG2Q9NRH3 451 aa16.16■□□□□ 0.18
COL9A3-201ENST00000343916 CLN8Q9UBY8 286 aa16.16■□□□□ 0.18
COL9A3-201ENST00000343916 IGKV1D-17A0A075B6S4 117 aa16.15■□□□□ 0.18
COL9A3-201ENST00000343916 SCAF4O95104 1147 aaKnown RBP16.15■□□□□ 0.18
COL9A3-201ENST00000343916 IGHV3-13P01766 116 aa16.15■□□□□ 0.18
COL9A3-201ENST00000343916 IGHV3-7P01780 117 aa16.15■□□□□ 0.18
COL9A3-201ENST00000343916 CD55P08174 381 aa16.15■□□□□ 0.18
COL9A3-201ENST00000343916 SRP19P09132 144 aaKnown RBP16.15■□□□□ 0.18
COL9A3-201ENST00000343916 EIF2S3P41091 472 aaKnown RBP16.15■□□□□ 0.18
COL9A3-201ENST00000343916 HBG1P69891 147 aa16.15■□□□□ 0.18
COL9A3-201ENST00000343916 HBG2P69892 147 aa16.15■□□□□ 0.18
COL9A3-201ENST00000343916 CATR1Q13166 79 aa16.15■□□□□ 0.18
COL9A3-201ENST00000343916 SSX7Q7RTT5 188 aa16.15■□□□□ 0.18
COL9A3-201ENST00000343916 EDARADDQ8WWZ3 215 aa16.15■□□□□ 0.18
COL9A3-201ENST00000343916 OR4C12Q96R67 309 aa16.15■□□□□ 0.18
COL9A3-201ENST00000343916 RD3LP0DJH9 198 aa16.14■□□□□ 0.18
COL9A3-201ENST00000343916 RPS16P62249 146 aaKnown RBP16.14■□□□□ 0.18
COL9A3-201ENST00000343916 SPINK9Q5DT21 86 aa16.14■□□□□ 0.18
COL9A3-201ENST00000343916 ZDHHC16Q969W1 377 aa16.14■□□□□ 0.18
COL9A3-201ENST00000343916 UBE2L5PA0A1B0GUS4 154 aa16.14■□□□□ 0.17
COL9A3-201ENST00000343916 ZNF727A8MUV8 499 aa16.14■□□□□ 0.17
COL9A3-201ENST00000343916 C15orf65H3BRN8 121 aa16.14■□□□□ 0.17
COL9A3-201ENST00000343916 ZNF737O75373 536 aa16.14■□□□□ 0.17
COL9A3-201ENST00000343916 FGF8P55075 233 aaPredicted RBP16.14■□□□□ 0.17
COL9A3-201ENST00000343916 ZNF726P1Q15940 193 aa16.14■□□□□ 0.17
COL9A3-201ENST00000343916 LCN15Q6UWW0 184 aa16.14■□□□□ 0.17
COL9A3-201ENST00000343916 LURAP1Q96LR2 239 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms