RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 HIST2H3PS2Q5TEC6 136 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 C16orf82Q7Z2V1 217 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 SPRY4Q9C004 299 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 IGKV1D-33P01593 117 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 IGKV1-33P01594 117 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 METTL15P1P0C7V9 234 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 SPP1P10451 314 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 SPCS3P61009 180 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 OR5I1Q13606 314 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 PGLYRP1O75594 196 aaPredicted RBP8.56□□□□□ -1.04
USP54-201ENST00000339859 RCC1P18754 421 aaPredicted RBP8.56□□□□□ -1.04
USP54-201ENST00000339859 ZNF273Q14593 569 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 SLC24A4Q8NFF2 622 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 ARID1BQ8NFD5 2236 aaPredicted RBP8.55□□□□□ -1.04
USP54-201ENST00000339859 PLXNB3Q9ULL4 1909 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 A0A0G2JK05 382 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 CEACAM18A8MTB9 384 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 SIGLEC5O15389 551 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 ZNF250P15622 560 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 GATA3P23771 443 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 ZCCHC24Q8N2G6 241 aaKnown RBP8.55□□□□□ -1.04
USP54-201ENST00000339859 OR5C1Q8NGR4 320 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 SLC25A22Q9H936 323 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 U3KQ87 197 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 DENND4AQ7Z401 1863 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 FAM24AA6NFZ4 105 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 GALR1P47211 349 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 RAB32Q13637 225 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 PRSS54Q6PEW0 395 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 RPRMLQ8N4K4 120 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 OR4A5Q8NH83 315 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 SSX3Q99909 188 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 DOK5Q9P104 306 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 SNAPINO95295 136 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 PTBP3O95758 552 aaKnown RBP8.55□□□□□ -1.04
USP54-201ENST00000339859 INHBBP09529 407 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 MFAP4P55083 255 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 HIST1H3AP68431 136 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 RELQ04864 619 aaPredicted RBP8.55□□□□□ -1.04
USP54-201ENST00000339859 EXOSC2Q13868 293 aaKnown RBP8.55□□□□□ -1.04
USP54-201ENST00000339859 TMEM155Q4W5P6 130 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 HIST2H3AQ71DI3 136 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 FRZBQ92765 325 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 LSM10Q969L4 123 aaKnown RBP8.55□□□□□ -1.04
USP54-201ENST00000339859 TMEM133Q9H2Q1 129 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 GNG13Q9P2W3 67 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 A0A1W2PNU3 283 aaPredicted RBP8.55□□□□□ -1.04
USP54-201ENST00000339859 SLC25A5P05141 298 aaKnown RBP8.55□□□□□ -1.04
USP54-201ENST00000339859 SLC25A4P12235 298 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 TPPP2P59282 170 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 GUCA2BQ16661 112 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 FAM216AQ8WUB2 273 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 TNFRSF14Q92956 283 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 FAM215AQ9Y5M1 114 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 RP1P56715 2156 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 F12P00748 615 aaPredicted RBP8.55□□□□□ -1.04
USP54-201ENST00000339859 ADIPOQQ15848 244 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 PAQR4Q8N4S7 273 aaPredicted RBP8.55□□□□□ -1.04
USP54-201ENST00000339859 ADAD2Q8NCV1 583 aaKnown RBP8.55□□□□□ -1.04
USP54-201ENST00000339859 OR13A1Q8NGR1 328 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 SLC25A28Q96A46 364 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 CXorf58Q96LI9 332 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 Q96MF0 132 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 TMEM140Q9NV12 185 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 RABAC1Q9UI14 185 aa8.55□□□□□ -1.04
USP54-201ENST00000339859 K7EM74 188 aa8.54□□□□□ -1.04
USP54-201ENST00000339859 POLR2GP62487 172 aaKnown RBP eCLIP8.54□□□□□ -1.04
USP54-201ENST00000339859 HABP2Q14520 560 aaPredicted RBP8.54□□□□□ -1.04
USP54-201ENST00000339859 C10orf113Q5VZT2 155 aa8.54□□□□□ -1.04
USP54-201ENST00000339859 SLC35E3Q7Z769 313 aa8.54□□□□□ -1.04
USP54-201ENST00000339859 RELL2Q8NC24 303 aaPredicted RBP8.54□□□□□ -1.04
USP54-201ENST00000339859 WDR89Q96FK6 387 aaPredicted RBP8.54□□□□□ -1.04
USP54-201ENST00000339859 NIPSNAP3BQ9BS92 247 aa8.54□□□□□ -1.04
USP54-201ENST00000339859 SLC25A33Q9BSK2 321 aa8.54□□□□□ -1.04
USP54-201ENST00000339859 QTRT1Q9BXR0 403 aaKnown RBP8.54□□□□□ -1.04
USP54-201ENST00000339859 TECRQ9NZ01 308 aaKnown RBP8.54□□□□□ -1.04
USP54-201ENST00000339859 HIGD1AQ9Y241 93 aa8.54□□□□□ -1.04
USP54-201ENST00000339859 TRAV40A0A0B4J280 105 aa8.54□□□□□ -1.04
USP54-201ENST00000339859 A0A0G2JLM5 398 aa8.54□□□□□ -1.04
USP54-201ENST00000339859 C12orf77C9JDV5 145 aa8.54□□□□□ -1.04
USP54-201ENST00000339859 M0R1W7 72 aa8.54□□□□□ -1.04
USP54-201ENST00000339859 MBPP02686 304 aaPredicted RBP8.54□□□□□ -1.04
USP54-201ENST00000339859 SMIM17P0DL12 118 aa8.54□□□□□ -1.04
USP54-201ENST00000339859 RPEL1Q2QD12 228 aa8.54□□□□□ -1.04
USP54-201ENST00000339859 LRRC75BQ2VPJ9 315 aa8.54□□□□□ -1.04
USP54-201ENST00000339859 Q6ZNX1 250 aa8.54□□□□□ -1.04
USP54-201ENST00000339859 VMO1Q7Z5L0 202 aa8.54□□□□□ -1.04
USP54-201ENST00000339859 C17orf50Q8WW18 174 aa8.54□□□□□ -1.04
USP54-201ENST00000339859 SPSB4Q96A44 273 aa8.54□□□□□ -1.04
USP54-201ENST00000339859 VSIG4Q9Y279 399 aa8.54□□□□□ -1.04
USP54-201ENST00000339859 IGFBP3P17936 291 aaPredicted RBP8.54□□□□□ -1.04
USP54-201ENST00000339859 RBM14Q96PK6 669 aaKnown RBP8.54□□□□□ -1.04
USP54-201ENST00000339859 ADAM10O14672 748 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 OSR1Q8TAX0 266 aaPredicted RBP8.53□□□□□ -1.04
USP54-201ENST00000339859 KLHDC3Q9BQ90 382 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 BMPR1BO00238 502 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 VSIG10L2P0DP72 767 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 DYNLT3P51808 116 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 BLNKQ8WV28 456 aa8.53□□□□□ -1.04
USP54-201ENST00000339859 TECTAO75443 2155 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms