RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 MBD2Q9UBB5 411 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 RPUSD1Q9UJJ7 312 aaKnown RBP3.4□□□□□ -1.87
MCF2-201ENST00000338585 TMEM56-RWDD3S4R434 201 aa3.4□□□□□ -1.87
MCF2-201ENST00000338585 C22orf46C9J442 243 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 M0R1X1 148 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 RGS11O94810 467 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 NXPH3O95157 252 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 FSTL3O95633 263 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 SCGB1D2O95969 90 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 IFNA21P01568 189 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 IGHV4-39P01824 125 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 SERPINE2P07093 398 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 PSMB6P28072 239 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 S100GP29377 79 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 S100A10P60903 97 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 TMEM155Q4W5P6 130 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 NMSQ5H8A3 153 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 WDR25Q64LD2 544 aaPredicted RBP3.39□□□□□ -1.87
MCF2-201ENST00000338585 NCR3LG1Q68D85 454 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 SP5Q6BEB4 398 aaPredicted RBP3.39□□□□□ -1.87
MCF2-201ENST00000338585 HEPN1Q6WQI6 88 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 ODF3L1Q8IXM7 274 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 LYG1Q8N1E2 194 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 ZBTB8BQ8NAP8 495 aaPredicted RBP3.39□□□□□ -1.87
MCF2-201ENST00000338585 EDARADDQ8WWZ3 215 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 RBPMSQ93062 196 aaKnown RBP3.39□□□□□ -1.87
MCF2-201ENST00000338585 NEIL1Q96FI4 390 aaPredicted RBP3.39□□□□□ -1.87
MCF2-201ENST00000338585 TIMD4Q96H15 378 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 GAL3ST2Q9H3Q3 398 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 SAA2-SAA4A0A096LPE2 208 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 RNF222A6NCQ9 220 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 IGKV1-5P01602 117 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 MBPP02686 304 aaPredicted RBP3.39□□□□□ -1.87
MCF2-201ENST00000338585 SAA2P0DJI9 122 aaPredicted RBP3.39□□□□□ -1.87
MCF2-201ENST00000338585 COX6B1P14854 86 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 EPHA1P21709 976 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 DUTP33316 252 aaKnown RBP3.39□□□□□ -1.87
MCF2-201ENST00000338585 LPAR6P43657 344 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 GPR6P46095 362 aaPredicted RBP3.39□□□□□ -1.87
MCF2-201ENST00000338585 TMEM33P57088 247 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 SRPXP78539 464 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 CYCSP99999 105 aaKnown RBP3.39□□□□□ -1.87
MCF2-201ENST00000338585 ZNF816Q0VGE8 651 aaPredicted RBP3.39□□□□□ -1.87
MCF2-201ENST00000338585 LCE2CQ5TA81 110 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 Q6ZRM9 215 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 ZNF546Q86UE3 836 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 ZNF295-AS1Q8N0V1 137 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 SPAG16Q8N0X2 631 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 ZBTB34Q8NCN2 500 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 OR8B3Q8NGG8 313 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 ASB13Q8WXK3 278 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 RRNAD1Q96FB5 475 aaKnown RBP3.39□□□□□ -1.87
MCF2-201ENST00000338585 OR8B2Q96RD0 313 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 CCL19Q99731 98 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 KRTAP4-12Q9BQ66 201 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 ZNF251Q9BRH9 671 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 MFFQ9GZY8 342 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 HEXA-AS1Q9H8Q6 139 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 PATZ1Q9HBE1 687 aaKnown RBP3.39□□□□□ -1.87
MCF2-201ENST00000338585 LIN7CQ9NUP9 197 aaKnown RBP3.39□□□□□ -1.87
MCF2-201ENST00000338585 MIOXQ9UGB7 285 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 TNFSF18Q9UNG2 199 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 TMED3Q9Y3Q3 217 aa3.39□□□□□ -1.87
MCF2-201ENST00000338585 LSM5Q9Y4Y9 91 aaKnown RBP3.39□□□□□ -1.87
MCF2-201ENST00000338585 TRBV23-1A0A0A0MS06 115 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 PPIAL4CA0A0B4J2A2 164 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 MSGN1A6NI15 193 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 HMSDA8MTL9 139 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 L7N2F9 121 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 S1PR2O95136 353 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 PPIAL4GP0DN37 164 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 IGHV1-8P0DP01 117 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 SLC25A4P12235 298 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 PLA2G2AP14555 144 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 VDAC1P21796 283 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 GNB2P62879 340 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 FGL1Q08830 312 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 DIAPH2-AS1Q14236 149 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 CXorf66Q5JRM2 361 aaPredicted RBP3.38□□□□□ -1.87
MCF2-201ENST00000338585 SLC25A48Q6ZT89 311 aaKnown RBP3.38□□□□□ -1.87
MCF2-201ENST00000338585 OR4D5Q8NGN0 318 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 OR1S1Q8NH92 325 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 THAP6Q8TBB0 222 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 DCUN1D4Q92564 292 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 GPR146Q96CH1 333 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 BPESC1Q9GZL8 116 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 RAB9BQ9NP90 201 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 LPAR3Q9UBY5 353 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 CRYBG3Q68DQ2 2970 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 CLEC18AA5D8T8 446 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 RNF212BA8MTL3 300 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 F5H0A9 414 aaPredicted RBP3.38□□□□□ -1.87
MCF2-201ENST00000338585 K7EPK0 472 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 ITGB1BP1O14713 200 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 FCGR3BO75015 233 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 GOSR1O95249 250 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 KRASP01116 189 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 ZFP36P26651 326 aaKnown RBP3.38□□□□□ -1.87
MCF2-201ENST00000338585 G6PCP35575 357 aa3.38□□□□□ -1.87
MCF2-201ENST00000338585 REG1BP48304 166 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms