RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 MOB4Q9Y3A3 225 aa12.59□□□□□ -0.39
CLN3-201ENST00000333496 LPLP06858 475 aa12.58□□□□□ -0.4
CLN3-201ENST00000333496 HIST1H1DP16402 221 aaKnown RBP12.58□□□□□ -0.4
CLN3-201ENST00000333496 HLA-DMAP28067 261 aa12.58□□□□□ -0.4
CLN3-201ENST00000333496 TALDO1P37837 337 aa12.58□□□□□ -0.4
CLN3-201ENST00000333496 VDAC2P45880 294 aaPredicted RBP12.58□□□□□ -0.4
CLN3-201ENST00000333496 INPP1P49441 399 aa12.58□□□□□ -0.4
CLN3-201ENST00000333496 TREML4Q6UXN2 200 aa12.58□□□□□ -0.4
CLN3-201ENST00000333496 TGIF2LXQ8IUE1 241 aa12.58□□□□□ -0.4
CLN3-201ENST00000333496 Q8N6K4 173 aa12.58□□□□□ -0.4
CLN3-201ENST00000333496 SAMD12Q8N8I0 201 aa12.58□□□□□ -0.4
CLN3-201ENST00000333496 OR5H6Q8NGV6 325 aa12.58□□□□□ -0.4
CLN3-201ENST00000333496 SPATA2Q9UM82 520 aa12.58□□□□□ -0.4
CLN3-201ENST00000333496 IGKV1-6A0A0C4DH72 117 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 METTL21EPA6NDL7 271 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 FAM25AB3EWG3 89 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 FAM25CB3EWG5 89 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 FAM25GB3EWG6 89 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 PLA2G10O15496 165 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 TXNL1O43396 289 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 LANCL1O43813 399 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 RGS11O94810 467 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 ELK1P19419 428 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 CD1BP29016 333 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 ARSJQ5FYB0 599 aaPredicted RBP12.57□□□□□ -0.4
CLN3-201ENST00000333496 HACD4Q5VWC8 232 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 C5orf56Q8N8D9 126 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 DUSP18Q8NEJ0 188 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 LGALS14Q8TCE9 139 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 ST6GAL2Q96JF0 529 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 ATG5Q9H1Y0 275 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 IFI27L2Q9H2X8 130 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 OR1A1Q9P1Q5 309 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 SLC23A1Q9UHI7 598 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 ELF5Q9UKW6 265 aaPredicted RBP12.57□□□□□ -0.4
CLN3-201ENST00000333496 MGAT4AQ9UM21 535 aa12.57□□□□□ -0.4
CLN3-201ENST00000333496 MGAM2Q2M2H8 2515 aa12.56□□□□□ -0.4
CLN3-201ENST00000333496 M0QZ24 198 aa12.56□□□□□ -0.4
CLN3-201ENST00000333496 M0QZK8 103 aa12.56□□□□□ -0.4
CLN3-201ENST00000333496 LYRM1O43325 122 aa12.56□□□□□ -0.4
CLN3-201ENST00000333496 EIF4EP06730 217 aaKnown RBP12.56□□□□□ -0.4
CLN3-201ENST00000333496 CD28P10747 220 aa12.56□□□□□ -0.4
CLN3-201ENST00000333496 OR3A3P47888 321 aa12.56□□□□□ -0.4
CLN3-201ENST00000333496 OR2AK2Q8NG84 335 aa12.56□□□□□ -0.4
CLN3-201ENST00000333496 SAA2-SAA4A0A096LPE2 208 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 LINC00854A0A1B0GVQ3 168 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 CENPXA8MT69 81 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 ST8SIA5O15466 376 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 FGF16O43320 207 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 TSPAN15O95858 294 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 FCGR3AP08637 254 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 CD3GP09693 182 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 SAA2P0DJI9 122 aaPredicted RBP12.55□□□□□ -0.4
CLN3-201ENST00000333496 SCAND1P57086 179 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 ZNF833PQ6ZTB9 187 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 OR2T10Q8NGZ9 312 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 CMTM3Q96MX0 182 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 ZNF251Q9BRH9 671 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 AGMATQ9BSE5 352 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 PLSCR3Q9NRY6 295 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 EXTL2Q9UBQ6 330 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 SERPINE3A8MV23 424 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 TRDCB7Z8K6 153 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 PEX14O75381 377 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 GSTT2P0CG29 244 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 GSTT2BP0CG30 244 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 ZBTB25P24278 435 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 CEACAM6P40199 344 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 C9orf152Q5JTZ5 239 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 UBE2NLQ5JXB2 153 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 MAFIPQ8WZ33 124 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 NABP2Q9BQ15 211 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 MRPL20Q9BYC9 149 aaKnown RBP12.55□□□□□ -0.4
CLN3-201ENST00000333496 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.55□□□□□ -0.4
CLN3-201ENST00000333496 ZNF230Q9UIE0 474 aaPredicted RBP12.55□□□□□ -0.4
CLN3-201ENST00000333496 ETV7Q9Y603 341 aa12.55□□□□□ -0.4
CLN3-201ENST00000333496 FAM240BA0A1B0GVZ2 78 aa12.54□□□□□ -0.4
CLN3-201ENST00000333496 ITGB1BP1O14713 200 aa12.54□□□□□ -0.4
CLN3-201ENST00000333496 FBXO24O75426 580 aa12.54□□□□□ -0.4
CLN3-201ENST00000333496 MOSP00540 346 aa12.54□□□□□ -0.4
CLN3-201ENST00000333496 S100A1P23297 94 aa12.54□□□□□ -0.4
CLN3-201ENST00000333496 NKX2-5P52952 324 aaPredicted RBP12.54□□□□□ -0.4
CLN3-201ENST00000333496 MRPS15P82914 257 aaKnown RBP12.54□□□□□ -0.4
CLN3-201ENST00000333496 C10orf99Q6UWK7 81 aa12.54□□□□□ -0.4
CLN3-201ENST00000333496 Q8N9W7 124 aa12.54□□□□□ -0.4
CLN3-201ENST00000333496 ABHD14BQ96IU4 210 aa12.54□□□□□ -0.4
CLN3-201ENST00000333496 PIPOXQ9P0Z9 390 aa12.54□□□□□ -0.4
CLN3-201ENST00000333496 RABL2AQ9UBK7 228 aaPredicted RBP12.54□□□□□ -0.4
CLN3-201ENST00000333496 RABL2BQ9UNT1 228 aa12.54□□□□□ -0.4
CLN3-201ENST00000333496 IGKV1D-8A0A087WSZ0 117 aa12.53□□□□□ -0.4
CLN3-201ENST00000333496 HSPA12AO43301 675 aa12.53□□□□□ -0.4
CLN3-201ENST00000333496 PROP1O75360 226 aa12.53□□□□□ -0.4
CLN3-201ENST00000333496 F2RL1P55085 397 aa12.53□□□□□ -0.4
CLN3-201ENST00000333496 ARFRP1Q13795 201 aa12.53□□□□□ -0.4
CLN3-201ENST00000333496 CDNFQ49AH0 187 aa12.53□□□□□ -0.4
CLN3-201ENST00000333496 RPL39P5Q59GN2 51 aa12.53□□□□□ -0.4
CLN3-201ENST00000333496 IGSF11Q5DX21 431 aa12.53□□□□□ -0.4
CLN3-201ENST00000333496 PYHIN1Q6K0P9 492 aa12.53□□□□□ -0.4
CLN3-201ENST00000333496 TCTE3Q8IZS6 198 aa12.53□□□□□ -0.4
CLN3-201ENST00000333496 OR4A4PQ8NGN8 299 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms