RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 NID2Q14112 1375 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 NUP98P52948 1817 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 WDFY3Q8IZQ1 3526 aa1.82□□□□□ -2.12
HMGB1-201ENST00000326004 IGHV3-72A0A0B4J1Y9 119 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 PVALEFA0A1B0GWK0 134 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 C5orf63A6NC05 138 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 RBFOX3A6NFN3 312 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 ARGFXA6NJG6 315 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 C9J4A7 227 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 FTCDNL1E5RQL4 147 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 C5orf67F2Z3F1 127 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 PGRMC1O00264 195 aaKnown RBP1.81□□□□□ -2.12
HMGB1-201ENST00000326004 UBDO15205 165 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 FGF16O43320 207 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 PSIP1O75475 530 aaKnown RBP1.81□□□□□ -2.12
HMGB1-201ENST00000326004 SCO1O75880 301 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 DHRS3O75911 302 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 CIAO1O76071 339 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 IGKV1-17P01599 117 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 IGLV2-8P01709 118 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 HLA-DQB1P01920 261 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 ORM1P02763 201 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 MT-ND4P03905 459 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 RLN2P04090 185 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 IL6P05231 212 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 COX5BP10606 129 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 PSKH1P11801 424 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 TAC1P20366 129 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 TSPOP30536 169 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 COILP38432 576 aaPredicted RBP1.81□□□□□ -2.12
HMGB1-201ENST00000326004 GCLMP48507 274 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 PSMB2P49721 201 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 RAP1GDS1P52306 607 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 STC1P52823 247 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 AP2S1P53680 142 aaPredicted RBP1.81□□□□□ -2.12
HMGB1-201ENST00000326004 RAB8AP61006 207 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 RHOAP61586 193 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 FKBP1AP62942 108 aaKnown RBP1.81□□□□□ -2.12
HMGB1-201ENST00000326004 BAXQ07812 192 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 ZNF616Q08AN1 781 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 POU6F1Q14863 301 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 PMVKQ15126 192 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 FBXL19-AS1Q494R0 122 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 YIF1BQ5BJH7 314 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 SDHAF4Q5VUM1 108 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 UGT2A3Q6UWM9 527 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 Q6ZSR6 202 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 TMEM156Q8N614 296 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 LINC00337Q8N6G1 96 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 ZNF645Q8N7E2 425 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 ACBD4Q8NC06 268 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 OR52N1Q8NH53 320 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 LHFPL5Q8TAF8 219 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 FAM45AQ8TCE6 357 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 DTD1Q8TEA8 209 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 TAMM41Q96BW9 452 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 MRAP2Q96G30 205 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 BIRC8Q96P09 236 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 QKIQ96PU8 341 aaKnown RBP eCLIP1.81□□□□□ -2.12
HMGB1-201ENST00000326004 OR2M4Q96R27 311 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 C12orf57Q99622 126 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 APOL4Q9BPW4 351 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 LRRC19Q9H756 370 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 DIABLOQ9NR28 239 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 RBM22Q9NW64 420 aaKnown RBP eCLIP1.81□□□□□ -2.12
HMGB1-201ENST00000326004 RAB22AQ9UL26 194 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 UTP11Q9Y3A2 253 aaKnown RBP1.81□□□□□ -2.12
HMGB1-201ENST00000326004 SLC22A7Q9Y694 548 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 FBN1P35555 2871 aaKnown RBP1.81□□□□□ -2.12
HMGB1-201ENST00000326004 F8P00451 2351 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 COL12A1Q99715 3063 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 LAMA5O15230 3695 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 NBEAL1Q6ZS30 2694 aa1.81□□□□□ -2.12
HMGB1-201ENST00000326004 FN1P02751 2386 aaKnown RBP1.8□□□□□ -2.12
HMGB1-201ENST00000326004 A0A1B0GXF2 115 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 OR5H1A6NKK0 313 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 OR2AT4A6NND4 320 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 A8MUU9 505 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 C2orf74A8MZ97 194 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 F8W036 122 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 GPR171O14626 319 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 SLC31A1O15431 190 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 SYNGR1O43759 233 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 SULT1C4O75897 302 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 CDRT1O95170 752 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 IGLV3-25P01717 112 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 SHBGP04278 402 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 IFNA16P05015 189 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 FABP1P07148 127 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 PVALBP20472 110 aaPredicted RBP1.8□□□□□ -2.12
HMGB1-201ENST00000326004 IL3RAP26951 378 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 PRSS3P35030 304 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 RPL35P42766 123 aaKnown RBP1.8□□□□□ -2.12
HMGB1-201ENST00000326004 TTPAP49638 278 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 GNG10P50151 68 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 RPL10AP62906 217 aaKnown RBP1.8□□□□□ -2.12
HMGB1-201ENST00000326004 GRB2P62993 217 aaKnown RBP1.8□□□□□ -2.12
HMGB1-201ENST00000326004 MED21Q13503 144 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 IGFBP7Q16270 282 aa1.8□□□□□ -2.12
HMGB1-201ENST00000326004 SLC25A35Q3KQZ1 300 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms