RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 CFHR1Q03591 330 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 UBE2DNLQ8IWF7 75 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 BEND2Q8NDZ0 799 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 DUX3Q96PT4 197 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 LINC01587Q99440 93 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 FOXA2Q9Y261 457 aaPredicted RBP6.67□□□□□ -1.34
SCN9A-201ENST00000303354 TRAV40A0A0B4J280 105 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 HYPMO75409 117 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 VDAC2P45880 294 aaPredicted RBP6.67□□□□□ -1.34
SCN9A-201ENST00000303354 DMKNQ6E0U4 476 aaPredicted RBP6.67□□□□□ -1.34
SCN9A-201ENST00000303354 C19orf35Q6ZS72 473 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 ZNF418Q8TF45 676 aaPredicted RBP6.67□□□□□ -1.34
SCN9A-201ENST00000303354 QTRT1Q9BXR0 403 aaKnown RBP6.67□□□□□ -1.34
SCN9A-201ENST00000303354 PXMP4Q9Y6I8 212 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 ABCA3Q99758 1704 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 MIC13Q5XKP0 118 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 DEGS2Q6QHC5 323 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 SLC25A42Q86VD7 318 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 ZNF645Q8N7E2 425 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 MGST3O14880 152 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 S1PR2O95136 353 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 GPR183P32249 361 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 MAS1LP35410 378 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 ZNF415Q09FC8 603 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 FAM57AQ8TBR7 257 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 TRIP11Q15643 1979 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 INHBBP09529 407 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 RPL35AP18077 110 aaKnown RBP6.67□□□□□ -1.34
SCN9A-201ENST00000303354 RNASE4P34096 147 aaKnown RBP6.67□□□□□ -1.34
SCN9A-201ENST00000303354 LSMEM1Q8N8F7 131 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 WNT5BQ9H1J7 359 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 IGKV1D-43A0A0B4J1Z2 117 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 ZNF253O75346 499 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 EGR1P18146 543 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 PRR31Q5SQ13 230 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 PPP1R17O96001 155 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 MFAP4P55083 255 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 FOXF2Q12947 444 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 ZNF561Q8N587 486 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 MIEN1Q9BRT3 115 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 CECR9P0C854 216 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 TMEM18Q96B42 140 aa6.67□□□□□ -1.34
SCN9A-201ENST00000303354 RNF133Q8WVZ7 376 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 SFXN3Q9BWM7 321 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 TMEM167BQ9NRX6 74 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 ST6GALNAC2Q9UJ37 374 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 KIAA1551Q9HCM1 1747 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 FUT5Q11128 374 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 P2RY6Q15077 328 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 MRAPQ8TCY5 172 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 EEF1AKMT3Q96AZ1 226 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 ZNF256Q9Y2P7 627 aaPredicted RBP6.66□□□□□ -1.34
SCN9A-201ENST00000303354 TMEM56-RWDD3S4R434 201 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 C1QL1O75973 258 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 PRSS23O95084 383 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 IL13RA2Q14627 380 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 PRR30Q53SZ7 412 aaPredicted RBP6.66□□□□□ -1.34
SCN9A-201ENST00000303354 WFIKKN1Q96NZ8 548 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 KCNE5Q9UJ90 142 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 A0A0U1RQV5 110 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 FBLL1A6NHQ2 334 aaKnown RBP6.66□□□□□ -1.34
SCN9A-201ENST00000303354 SNURFLB1AK76 121 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 KLF4O43474 513 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 OR4X2Q8NGF9 303 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 RPS4Y2Q8TD47 263 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 VWCEQ96DN2 955 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 GSX2Q9BZM3 304 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 FUT9Q9Y231 359 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 PHLDA3Q9Y5J5 127 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 MYO7AQ13402 2215 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 USP54Q70EL1 1684 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 AKAP11Q9UKA4 1901 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 NPFFO15130 113 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 ASAH2BP0C7U1 165 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 HIST1H1BP16401 226 aaKnown RBP6.66□□□□□ -1.34
SCN9A-201ENST00000303354 CXCL3P19876 107 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 FGF12P61328 243 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 KHDC3LQ587J8 217 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 CFHR5Q9BXR6 569 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 SLC17A5Q9NRA2 495 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 TOMM7Q9P0U1 55 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 SPRR3Q9UBC9 169 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 OGG1O15527 345 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 WDR25Q64LD2 544 aaPredicted RBP6.66□□□□□ -1.34
SCN9A-201ENST00000303354 RNF24Q9Y225 148 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 LDLRAD4O15165 306 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 CIDEAO60543 219 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 GREM1O60565 184 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 SLC25A47Q6Q0C1 308 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 CLEC7AQ9BXN2 247 aa6.66□□□□□ -1.34
SCN9A-201ENST00000303354 NPPCP23582 126 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 SP5Q6BEB4 398 aaPredicted RBP6.65□□□□□ -1.34
SCN9A-201ENST00000303354 OR5AU1Q8NGC0 362 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 NPIPB3Q92617 1050 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 GTF3AQ92664 365 aaKnown RBP6.65□□□□□ -1.34
SCN9A-201ENST00000303354 CHST5Q9GZS9 411 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 ANKRD31Q8N7Z5 1873 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 TRIP12Q14669 1992 aaPredicted RBP6.65□□□□□ -1.34
SCN9A-201ENST00000303354 B9A039 149 aa6.65□□□□□ -1.34
SCN9A-201ENST00000303354 HPRT1P00492 218 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms