RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 IGLV3-12A0A075B6K2 115 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 C21orf140B9A014 251 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 SRSF10O75494 262 aaKnown RBP13.21□□□□□ -0.29
SHH-201ENST00000297261 GPX4P36969 197 aaPredicted RBP13.21□□□□□ -0.29
SHH-201ENST00000297261 SMIM21Q3B7S5 101 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 ATOH7Q8N100 152 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 POM121L2Q96KW2 1035 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 Q96M66 194 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 CYTL1Q9NRR1 136 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 CISD1Q9NZ45 108 aaKnown RBP13.21□□□□□ -0.29
SHH-201ENST00000297261 RAB29O14966 203 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 OR5AL1P0C617 328 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 BPIFB3P59826 476 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 HEPN1Q6WQI6 88 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 LURAP1LQ8IV03 231 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 Q8IYB0 196 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 SELENOHQ8IZQ5 122 aaKnown RBP13.21□□□□□ -0.29
SHH-201ENST00000297261 FOXJ2Q9P0K8 574 aa13.21□□□□□ -0.29
SHH-201ENST00000297261 RTL8BQ17RB0 113 aa13.21□□□□□ -0.3
SHH-201ENST00000297261 SNAI3Q3KNW1 292 aa13.21□□□□□ -0.3
SHH-201ENST00000297261 ALKBH6Q3KRA9 238 aa13.21□□□□□ -0.3
SHH-201ENST00000297261 R3HDM4Q96D70 268 aa13.21□□□□□ -0.3
SHH-201ENST00000297261 ATXN7O15265 892 aaPredicted RBP13.2□□□□□ -0.3
SHH-201ENST00000297261 DCAF10Q5QP82 559 aa13.2□□□□□ -0.3
SHH-201ENST00000297261 STPG1Q5TH74 334 aa13.2□□□□□ -0.3
SHH-201ENST00000297261 LYG1Q8N1E2 194 aa13.2□□□□□ -0.3
SHH-201ENST00000297261 PRSS3P2Q8NHM4 247 aa13.2□□□□□ -0.3
SHH-201ENST00000297261 BLNKQ8WV28 456 aa13.2□□□□□ -0.3
SHH-201ENST00000297261 DMRTA2Q96SC8 542 aa13.2□□□□□ -0.3
SHH-201ENST00000297261 OR5B21A6NL26 309 aa13.2□□□□□ -0.3
SHH-201ENST00000297261 KBTBD11O94819 623 aa13.2□□□□□ -0.3
SHH-201ENST00000297261 SRP14P37108 136 aaKnown RBP13.2□□□□□ -0.3
SHH-201ENST00000297261 MEOX1P50221 254 aa13.2□□□□□ -0.3
SHH-201ENST00000297261 UBE2L3P68036 154 aaKnown RBP13.2□□□□□ -0.3
SHH-201ENST00000297261 OR8I2Q8N0Y5 310 aa13.2□□□□□ -0.3
SHH-201ENST00000297261 NFAM1Q8NET5 270 aaPredicted RBP13.2□□□□□ -0.3
SHH-201ENST00000297261 OR2H1Q9GZK4 316 aa13.2□□□□□ -0.3
SHH-201ENST00000297261 TMEM191AQ9H0A3 160 aa13.2□□□□□ -0.3
SHH-201ENST00000297261 MFAP2P55001 183 aa13.2□□□□□ -0.3
SHH-201ENST00000297261 OR2D3Q8NGH3 330 aa13.2□□□□□ -0.3
SHH-201ENST00000297261 ZNF891A8MT65 544 aaPredicted RBP13.19□□□□□ -0.3
SHH-201ENST00000297261 SLC25A5P05141 298 aaKnown RBP13.19□□□□□ -0.3
SHH-201ENST00000297261 ACP1P24666 158 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 HTR1DP28221 377 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 PAQR4Q8N4S7 273 aaPredicted RBP13.19□□□□□ -0.3
SHH-201ENST00000297261 OR4X1Q8NH49 305 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 ABHD3Q8WU67 409 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 NUDT16L1Q9BRJ7 211 aaKnown RBP13.19□□□□□ -0.3
SHH-201ENST00000297261 TRAV38-1A0A0B4J264 116 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 PGLYRP1O75594 196 aaPredicted RBP13.19□□□□□ -0.3
SHH-201ENST00000297261 IGFBP3P17936 291 aaPredicted RBP13.19□□□□□ -0.3
SHH-201ENST00000297261 MRPL14Q6P1L8 145 aaKnown RBP13.19□□□□□ -0.3
SHH-201ENST00000297261 ZADH2Q8N4Q0 377 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 FZR1Q9UM11 496 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 RALGAPA1Q6GYQ0 2036 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 H0Y980 276 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 K7ERU9 68 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 FOLR2P14207 255 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 SELEP16581 610 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 TMEM251Q8N6I4 163 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 OR4B1Q8NGF8 309 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 CXCL1P09341 107 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 ZNF766Q5HY98 468 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 VWA1Q6PCB0 445 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 SLC25A47Q6Q0C1 308 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 ZNF818PQ6ZRF7 136 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 TIMP4Q99727 224 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 PARD6GQ9BYG4 376 aaPredicted RBP13.19□□□□□ -0.3
SHH-201ENST00000297261 MRPL18Q9H0U6 180 aaKnown RBP13.19□□□□□ -0.3
SHH-201ENST00000297261 HES4Q9HCC6 221 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 DYNLRB1Q9NP97 96 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 TMEM38BQ9NVV0 291 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 UQCR10Q9UDW1 63 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 WIPI2Q9Y4P8 454 aa13.19□□□□□ -0.3
SHH-201ENST00000297261 CNIH1O95406 144 aa13.18□□□□□ -0.3
SHH-201ENST00000297261 HPRT1P00492 218 aa13.18□□□□□ -0.3
SHH-201ENST00000297261 CBLN1P23435 193 aa13.18□□□□□ -0.3
SHH-201ENST00000297261 GNB1P62873 340 aa13.18□□□□□ -0.3
SHH-201ENST00000297261 ZNF718Q3SXZ3 478 aa13.18□□□□□ -0.3
SHH-201ENST00000297261 A0A0J9YW62 118 aa13.18□□□□□ -0.3
SHH-201ENST00000297261 FBLL1A6NHQ2 334 aaKnown RBP13.18□□□□□ -0.3
SHH-201ENST00000297261 FAM27BQ5VT28 67 aa13.18□□□□□ -0.3
SHH-201ENST00000297261 FNDC7Q5VTL7 733 aa13.18□□□□□ -0.3
SHH-201ENST00000297261 ST6GALNAC3Q8NDV1 305 aa13.18□□□□□ -0.3
SHH-201ENST00000297261 HIST1H2BLQ99880 126 aa13.18□□□□□ -0.3
SHH-201ENST00000297261 NPBWR2P48146 333 aa13.18□□□□□ -0.3
SHH-201ENST00000297261 GNG10P50151 68 aa13.18□□□□□ -0.3
SHH-201ENST00000297261 RAB7AP51149 207 aa13.18□□□□□ -0.3
SHH-201ENST00000297261 YTHDF2Q9Y5A9 579 aaKnown RBP13.18□□□□□ -0.3
SHH-201ENST00000297261 CLDN16Q9Y5I7 305 aa13.18□□□□□ -0.3
SHH-201ENST00000297261 CLPSP04118 112 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 CD1BP29016 333 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 CHRNB4P30926 498 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 MISP3Q96FF7 219 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 MARS2Q96GW9 593 aaKnown RBP13.17□□□□□ -0.3
SHH-201ENST00000297261 LINC01387J3KSC0 135 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 MAGEA5P43359 124 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 OR4A47Q6IF82 309 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 KLHDC3Q9BQ90 382 aa13.17□□□□□ -0.3
SHH-201ENST00000297261 MPC1Q9Y5U8 109 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms