RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 CD200P41217 278 aa9.56□□□□□ -0.88
CUX1-202ENST00000292538 PJVKQ0ZLH3 352 aa9.56□□□□□ -0.88
CUX1-202ENST00000292538 PPP1R35Q8TAP8 253 aa9.56□□□□□ -0.88
CUX1-202ENST00000292538 ZNRD1Q9P1U0 126 aa9.56□□□□□ -0.88
CUX1-202ENST00000292538 CLN8Q9UBY8 286 aa9.56□□□□□ -0.88
CUX1-202ENST00000292538 A0A1B0GU03 582 aa9.56□□□□□ -0.88
CUX1-202ENST00000292538 KIAA1324LA8MWY0 1029 aaPredicted RBP9.56□□□□□ -0.88
CUX1-202ENST00000292538 IFNL4K9M1U5 179 aa9.56□□□□□ -0.88
CUX1-202ENST00000292538 GAPDHP04406 335 aaKnown RBP9.56□□□□□ -0.88
CUX1-202ENST00000292538 OR2B8PP59922 312 aa9.56□□□□□ -0.88
CUX1-202ENST00000292538 RBPJQ06330 500 aa9.56□□□□□ -0.88
CUX1-202ENST00000292538 LILRB2Q8N423 598 aa9.56□□□□□ -0.88
CUX1-202ENST00000292538 FAM169BQ8N8A8 192 aa9.56□□□□□ -0.88
CUX1-202ENST00000292538 ZDHHC16Q969W1 377 aa9.56□□□□□ -0.88
CUX1-202ENST00000292538 MARVELD3Q96A59 401 aa9.56□□□□□ -0.88
CUX1-202ENST00000292538 MSRB2Q9Y3D2 182 aa9.56□□□□□ -0.88
CUX1-202ENST00000292538 MGST3O14880 152 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 THBDP07204 575 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 GRNP28799 593 aaKnown RBP9.55□□□□□ -0.88
CUX1-202ENST00000292538 PLA2G5P39877 138 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 AKR1C3P42330 323 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 PAX9P55771 341 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 TMPRSS3P57727 454 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 CATR1Q13166 79 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 DYNLRB1Q9NP97 96 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 RNF212BA8MTL3 300 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 RNASEK-C17orf49H0YIS7 233 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 SLC31A2O15432 143 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 ADCYAP1P18509 176 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 ZNF134P52741 427 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 TLE1Q04724 770 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 ZNF266Q14584 549 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 ADIPOQQ15848 244 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 NCR3LG1Q68D85 454 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 H2BFWTQ7Z2G1 175 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 PRR7Q8TB68 274 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 H1FXQ92522 213 aaKnown RBP9.55□□□□□ -0.88
CUX1-202ENST00000292538 SNX22Q96L94 193 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 RSG1Q9BU20 258 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 UQCC1Q9NVA1 299 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 RNF115Q9Y4L5 304 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 MED13LQ71F56 2210 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 FAM74A7A6NL05 159 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 C9JQL5 133 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 NPIPB11E5RHQ5 1161 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 CD55P08174 381 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 GZMHP20718 246 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 PTAFRP25105 342 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 FAM74A3Q4VXF1 159 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 SMIM8Q96KF7 97 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 SAP30LQ9HAJ7 183 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 C19orf12Q9NSK7 152 aa9.55□□□□□ -0.88
CUX1-202ENST00000292538 SVEP1Q4LDE5 3571 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 YLPM1P49750 1951 aaKnown RBP9.54□□□□□ -0.88
CUX1-202ENST00000292538 IGLV3-9A0A075B6K5 115 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 K7N7A8 449 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 IFNA17P01571 189 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 ACAA1P09110 424 aaPredicted RBP9.54□□□□□ -0.88
CUX1-202ENST00000292538 SFTA3P0C7M3 94 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 SPP1P10451 314 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 F2RL1P55085 397 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 UBE2KP61086 200 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 PRB3Q04118 309 aaPredicted RBP9.54□□□□□ -0.88
CUX1-202ENST00000292538 ODF3L1Q8IXM7 274 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 C1orf174Q8IYL3 243 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 EIF4E3Q8N5X7 224 aaKnown RBP9.54□□□□□ -0.88
CUX1-202ENST00000292538 C20orf24Q9BUV8 137 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 CALYQ9NYX4 217 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 ASH1LQ9NR48 2969 aaKnown RBP9.54□□□□□ -0.88
CUX1-202ENST00000292538 RAB19A4D1S5 217 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 CLEC18AA5D8T8 446 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 CEBPZOSA8MTT3 80 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 C15orf65H3BRN8 121 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 CCL21O00585 134 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 ATG12O94817 140 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 IFNA5P01569 189 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 MORN2Q502X0 79 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 LYG1Q8N1E2 194 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 CLEC18CQ8NCF0 446 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 SFT2D1Q8WV19 159 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 IL22RA2Q969J5 263 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 SAT2Q96F10 170 aaPredicted RBP9.54□□□□□ -0.88
CUX1-202ENST00000292538 LURAP1Q96LR2 239 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 NKX6-2Q9C056 277 aaPredicted RBP9.54□□□□□ -0.88
CUX1-202ENST00000292538 CACFD1Q9UGQ2 172 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 IL19Q9UHD0 177 aa9.54□□□□□ -0.88
CUX1-202ENST00000292538 DUXBA0A1W2PPF3 345 aa9.53□□□□□ -0.88
CUX1-202ENST00000292538 PLAUP00749 431 aa9.53□□□□□ -0.88
CUX1-202ENST00000292538 DANCRP0C864 163 aa9.53□□□□□ -0.88
CUX1-202ENST00000292538 OR13C7P0DN81 318 aa9.53□□□□□ -0.88
CUX1-202ENST00000292538 ELLP55199 621 aaPredicted RBP9.53□□□□□ -0.88
CUX1-202ENST00000292538 CASP6P55212 293 aa9.53□□□□□ -0.88
CUX1-202ENST00000292538 ARL16Q0P5N6 197 aa9.53□□□□□ -0.88
CUX1-202ENST00000292538 PUSL1Q8N0Z8 303 aaKnown RBP9.53□□□□□ -0.88
CUX1-202ENST00000292538 SCGB1C1Q8TD33 95 aa9.53□□□□□ -0.88
CUX1-202ENST00000292538 GINS3Q9BRX5 216 aa9.53□□□□□ -0.88
CUX1-202ENST00000292538 HINT2Q9BX68 163 aa9.53□□□□□ -0.88
CUX1-202ENST00000292538 LYNX1G3V0Z9 82 aa9.53□□□□□ -0.88
CUX1-202ENST00000292538 HMGB3O15347 200 aaKnown RBP9.53□□□□□ -0.88
CUX1-202ENST00000292538 SEC11BP0C7V7 166 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms