RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ARG1P05089 322 aa16.74■□□□□ 0.27
VPS53-201ENST00000291074 OR8G2PQ6IF36 304 aa16.74■□□□□ 0.27
VPS53-201ENST00000291074 CLN8Q9UBY8 286 aa16.74■□□□□ 0.27
VPS53-201ENST00000291074 A0A1B0GWJ7 208 aa16.74■□□□□ 0.27
VPS53-201ENST00000291074 BTBD17A6NE02 478 aa16.74■□□□□ 0.27
VPS53-201ENST00000291074 ZNF737O75373 536 aa16.74■□□□□ 0.27
VPS53-201ENST00000291074 EIF3GO75821 320 aaKnown RBP eCLIP16.74■□□□□ 0.27
VPS53-201ENST00000291074 P0C879 139 aa16.74■□□□□ 0.27
VPS53-201ENST00000291074 TLE4Q04727 773 aa16.74■□□□□ 0.27
VPS53-201ENST00000291074 CATR1Q13166 79 aa16.74■□□□□ 0.27
VPS53-201ENST00000291074 IGFL3Q6UXB1 125 aa16.74■□□□□ 0.27
VPS53-201ENST00000291074 C15orf54Q8N8G6 183 aa16.74■□□□□ 0.27
VPS53-201ENST00000291074 A0A1W2PPE2 198 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 C15orf65H3BRN8 121 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 ATXN7O15265 892 aaPredicted RBP16.73■□□□□ 0.27
VPS53-201ENST00000291074 SRP19P09132 144 aaKnown RBP16.73■□□□□ 0.27
VPS53-201ENST00000291074 RPS16P62249 146 aaKnown RBP16.73■□□□□ 0.27
VPS53-201ENST00000291074 Q6ZS92 163 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 SSX7Q7RTT5 188 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 LURAP1Q96LR2 239 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 OR2V2Q96R30 315 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 OR4C12Q96R67 309 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 TOLLIPQ9H0E2 274 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 DSCAMO60469 2012 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 SCAF4O95104 1147 aaKnown RBP16.73■□□□□ 0.27
VPS53-201ENST00000291074 IGHV3-13P01766 116 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 IGHV3-7P01780 117 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 HOXA1P49639 335 aaPredicted RBP16.73■□□□□ 0.27
VPS53-201ENST00000291074 FAM180AQ6UWF9 173 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 GCSAMQ8N6F7 178 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 CLDND2Q8NHS1 167 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 COA4Q9NYJ1 87 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 HCFC1P51610 2035 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 UBE2L5PA0A1B0GUS4 154 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 SRRM5B3KS81 715 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 HBG1P69891 147 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 HBG2P69892 147 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 ZNF726P1Q15940 193 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 SPINK9Q5DT21 86 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 MOGAT3Q86VF5 341 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 RBMXL3Q8N7X1 1067 aaKnown RBP16.73■□□□□ 0.27
VPS53-201ENST00000291074 CYB561D1Q8N8Q1 229 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 ZDHHC16Q969W1 377 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 HSPB7Q9UBY9 170 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 WASF3Q9UPY6 502 aa16.73■□□□□ 0.27
VPS53-201ENST00000291074 SPRY3O43610 288 aa16.72■□□□□ 0.27
VPS53-201ENST00000291074 CD55P08174 381 aa16.72■□□□□ 0.27
VPS53-201ENST00000291074 SLC38A11Q08AI6 406 aa16.72■□□□□ 0.27
VPS53-201ENST00000291074 FAM201AQ5SY85 155 aa16.72■□□□□ 0.27
VPS53-201ENST00000291074 FAM169BQ8N8A8 192 aa16.72■□□□□ 0.27
VPS53-201ENST00000291074 LRRC30A6NM36 301 aa16.72■□□□□ 0.27
VPS53-201ENST00000291074 KLK10O43240 276 aa16.72■□□□□ 0.27
VPS53-201ENST00000291074 LRRC75BQ2VPJ9 315 aa16.72■□□□□ 0.27
VPS53-201ENST00000291074 TIMM23BQ5SRD1 257 aa16.72■□□□□ 0.27
VPS53-201ENST00000291074 C1orf185Q5T7R7 199 aa16.72■□□□□ 0.27
VPS53-201ENST00000291074 LCN15Q6UWW0 184 aa16.72■□□□□ 0.27
VPS53-201ENST00000291074 ZNRF1Q8ND25 227 aa16.72■□□□□ 0.27
VPS53-201ENST00000291074 PRSS33Q8NF86 280 aa16.72■□□□□ 0.27
VPS53-201ENST00000291074 AGMATQ9BSE5 352 aa16.72■□□□□ 0.27
VPS53-201ENST00000291074 LINC00587B1AMM8 73 aa16.71■□□□□ 0.27
VPS53-201ENST00000291074 FAM90A26D6RGX4 464 aa16.71■□□□□ 0.27
VPS53-201ENST00000291074 SPINT2O43291 252 aa16.71■□□□□ 0.27
VPS53-201ENST00000291074 FGF8P55075 233 aaPredicted RBP16.71■□□□□ 0.27
VPS53-201ENST00000291074 ELLP55199 621 aaPredicted RBP16.71■□□□□ 0.27
VPS53-201ENST00000291074 HABP2Q14520 560 aaPredicted RBP16.71■□□□□ 0.27
VPS53-201ENST00000291074 MSMO1Q15800 293 aa16.71■□□□□ 0.27
VPS53-201ENST00000291074 DPPA3Q6W0C5 159 aa16.71■□□□□ 0.27
VPS53-201ENST00000291074 C22orf34Q6ZV56 151 aa16.71■□□□□ 0.27
VPS53-201ENST00000291074 KDF1Q8NAX2 398 aaPredicted RBP16.71■□□□□ 0.27
VPS53-201ENST00000291074 WDR61Q9GZS3 305 aaKnown RBP16.71■□□□□ 0.27
VPS53-201ENST00000291074 GNG13Q9P2W3 67 aa16.71■□□□□ 0.27
VPS53-201ENST00000291074 MUC6Q6W4X9 2439 aa16.71■□□□□ 0.27
VPS53-201ENST00000291074 CUL9Q8IWT3 2517 aa16.71■□□□□ 0.27
VPS53-201ENST00000291074 PPIHO43447 177 aaKnown RBP16.71■□□□□ 0.26
VPS53-201ENST00000291074 ZG16O60844 167 aa16.71■□□□□ 0.26
VPS53-201ENST00000291074 CRYAAP02489 173 aa16.71■□□□□ 0.26
VPS53-201ENST00000291074 PAX6P26367 422 aa16.71■□□□□ 0.26
VPS53-201ENST00000291074 ZNF506Q5JVG8 444 aa16.71■□□□□ 0.26
VPS53-201ENST00000291074 TMEM14EPQ6UXP3 125 aa16.71■□□□□ 0.26
VPS53-201ENST00000291074 SMDT1Q9H4I9 107 aa16.71■□□□□ 0.26
VPS53-201ENST00000291074 RTP5Q14D33 572 aa16.7■□□□□ 0.26
VPS53-201ENST00000291074 RHEBQ15382 184 aa16.7■□□□□ 0.26
VPS53-201ENST00000291074 EGLN1Q9GZT9 426 aa16.7■□□□□ 0.26
VPS53-201ENST00000291074 ZNF665Q9H7R5 613 aa16.7■□□□□ 0.26
VPS53-201ENST00000291074 hCG_1809904A0A1W2PP81 198 aa16.7■□□□□ 0.26
VPS53-201ENST00000291074 A0A1W2PR64 198 aa16.7■□□□□ 0.26
VPS53-201ENST00000291074 A0A1W2PRV1 198 aa16.7■□□□□ 0.26
VPS53-201ENST00000291074 H3BQ15 152 aa16.7■□□□□ 0.26
VPS53-201ENST00000291074 HBE1P02100 147 aa16.7■□□□□ 0.26
VPS53-201ENST00000291074 SELLP14151 372 aa16.7■□□□□ 0.26
VPS53-201ENST00000291074 KLF3P57682 345 aaPredicted RBP16.7■□□□□ 0.26
VPS53-201ENST00000291074 MZT1Q08AG7 82 aa16.7■□□□□ 0.26
VPS53-201ENST00000291074 FAM209BQ5JX69 171 aa16.7■□□□□ 0.26
VPS53-201ENST00000291074 FAM24BQ8N5W8 94 aa16.7■□□□□ 0.26
VPS53-201ENST00000291074 ITLN1Q8WWA0 313 aa16.7■□□□□ 0.26
VPS53-201ENST00000291074 RBMXL1Q96E39 390 aaKnown RBP16.7■□□□□ 0.26
VPS53-201ENST00000291074 MEGF10Q96KG7 1140 aa16.7■□□□□ 0.26
VPS53-201ENST00000291074 CTNNBIP1Q9NSA3 81 aaPredicted RBP16.7■□□□□ 0.26
VPS53-201ENST00000291074 ACACAQ13085 2346 aa16.69■□□□□ 0.26
VPS53-201ENST00000291074 PROP1O75360 226 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms