RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 M0R1X1 148 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 IGKV1-5P01602 117 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 RLN2P04090 185 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 LYG1Q8N1E2 194 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 PAX5Q02548 391 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 LRRC10Q5BKY1 277 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 SSX9Q7RTT3 188 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 VKORC1L1Q8N0U8 176 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 ZNF843Q8N446 348 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 ASB13Q8WXK3 278 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 FBN2P35556 2912 aa13.58□□□□□ -0.23
USP4-201ENST00000265560 S1PR2O95136 353 aa13.58□□□□□ -0.24
USP4-201ENST00000265560 NMSQ5H8A3 153 aa13.58□□□□□ -0.24
USP4-201ENST00000265560 AKR1E2Q96JD6 320 aa13.58□□□□□ -0.24
USP4-201ENST00000265560 PLEKHF2Q9H8W4 249 aa13.58□□□□□ -0.24
USP4-201ENST00000265560 RCL1Q9Y2P8 373 aaKnown RBP13.58□□□□□ -0.24
USP4-201ENST00000265560 NSG2Q9Y328 171 aa13.58□□□□□ -0.24
USP4-201ENST00000265560 H3BP45 60 aa13.58□□□□□ -0.24
USP4-201ENST00000265560 F2RL2O00254 374 aa13.58□□□□□ -0.24
USP4-201ENST00000265560 SSSCA1O60232 199 aa13.58□□□□□ -0.24
USP4-201ENST00000265560 VDAC1P21796 283 aa13.58□□□□□ -0.24
USP4-201ENST00000265560 KCNRGQ8N5I3 272 aa13.58□□□□□ -0.24
USP4-201ENST00000265560 RAB1BQ9H0U4 201 aa13.58□□□□□ -0.24
USP4-201ENST00000265560 IFI27L2Q9H2X8 130 aa13.58□□□□□ -0.24
USP4-201ENST00000265560 GFOD1Q9NXC2 390 aa13.58□□□□□ -0.24
USP4-201ENST00000265560 CACNG5Q9UF02 275 aa13.58□□□□□ -0.24
USP4-201ENST00000265560 KANTRA0A1W2PQU2 76 aa13.57□□□□□ -0.24
USP4-201ENST00000265560 hADV38S2A0JD32 116 aa13.57□□□□□ -0.24
USP4-201ENST00000265560 TNFRSF13BO14836 293 aaPredicted RBP13.57□□□□□ -0.24
USP4-201ENST00000265560 DEDDO75618 318 aa13.57□□□□□ -0.24
USP4-201ENST00000265560 C1QL1O75973 258 aa13.57□□□□□ -0.24
USP4-201ENST00000265560 C11orf71Q6IPW1 123 aa13.57□□□□□ -0.24
USP4-201ENST00000265560 TRAT1Q6PIZ9 186 aa13.57□□□□□ -0.24
USP4-201ENST00000265560 JPT1Q9UK76 154 aa13.57□□□□□ -0.24
USP4-201ENST00000265560 FCGR3BO75015 233 aa13.57□□□□□ -0.24
USP4-201ENST00000265560 DAOP14920 347 aa13.57□□□□□ -0.24
USP4-201ENST00000265560 CR1LQ2VPA4 569 aa13.57□□□□□ -0.24
USP4-201ENST00000265560 ABHD14AQ9BUJ0 271 aa13.57□□□□□ -0.24
USP4-201ENST00000265560 LIN7CQ9NUP9 197 aaKnown RBP13.57□□□□□ -0.24
USP4-201ENST00000265560 ANKRD17O75179 2603 aaKnown RBP13.57□□□□□ -0.24
USP4-201ENST00000265560 A1L4Q6 167 aa13.57□□□□□ -0.24
USP4-201ENST00000265560 NKX2-1P43699 371 aaPredicted RBP13.57□□□□□ -0.24
USP4-201ENST00000265560 REG1BP48304 166 aa13.57□□□□□ -0.24
USP4-201ENST00000265560 SPINK9Q5DT21 86 aa13.57□□□□□ -0.24
USP4-201ENST00000265560 THOC7Q6I9Y2 204 aaKnown RBP13.57□□□□□ -0.24
USP4-201ENST00000265560 SAA2-SAA4A0A096LPE2 208 aa13.56□□□□□ -0.24
USP4-201ENST00000265560 SAA2P0DJI9 122 aaPredicted RBP13.56□□□□□ -0.24
USP4-201ENST00000265560 SMCO1Q147U7 214 aa13.56□□□□□ -0.24
USP4-201ENST00000265560 OR4D5Q8NGN0 318 aa13.56□□□□□ -0.24
USP4-201ENST00000265560 EDARADDQ8WWZ3 215 aa13.56□□□□□ -0.24
USP4-201ENST00000265560 IDI2-AS1Q9NZ38 188 aa13.56□□□□□ -0.24
USP4-201ENST00000265560 ABCA1O95477 2261 aa13.56□□□□□ -0.24
USP4-201ENST00000265560 ST8SIA3O43173 380 aa13.56□□□□□ -0.24
USP4-201ENST00000265560 YPEL1O60688 119 aa13.56□□□□□ -0.24
USP4-201ENST00000265560 OR2F2O95006 317 aa13.56□□□□□ -0.24
USP4-201ENST00000265560 HKR1P10072 659 aa13.56□□□□□ -0.24
USP4-201ENST00000265560 SRPXP78539 464 aa13.56□□□□□ -0.24
USP4-201ENST00000265560 NHLH2Q02577 135 aa13.56□□□□□ -0.24
USP4-201ENST00000265560 OR2F1Q13607 317 aa13.56□□□□□ -0.24
USP4-201ENST00000265560 ZNF714Q96N38 554 aa13.56□□□□□ -0.24
USP4-201ENST00000265560 YPEL2Q96QA6 119 aa13.56□□□□□ -0.24
USP4-201ENST00000265560 SEBOXQ9HB31 216 aaPredicted RBP13.56□□□□□ -0.24
USP4-201ENST00000265560 A0A0D9SG52 128 aa13.55□□□□□ -0.24
USP4-201ENST00000265560 TMEM50AO95807 157 aa13.55□□□□□ -0.24
USP4-201ENST00000265560 RPL12P30050 165 aaKnown RBP13.55□□□□□ -0.24
USP4-201ENST00000265560 CAV2P51636 162 aa13.55□□□□□ -0.24
USP4-201ENST00000265560 ZANQ9Y493 2812 aa13.55□□□□□ -0.24
USP4-201ENST00000265560 NBPF19A0A087WUL8 3843 aa13.55□□□□□ -0.24
USP4-201ENST00000265560 FAM24AA6NFZ4 105 aa13.55□□□□□ -0.24
USP4-201ENST00000265560 PPOXP50336 477 aa13.55□□□□□ -0.24
USP4-201ENST00000265560 EIF4EBP1Q13541 118 aaPredicted RBP13.55□□□□□ -0.24
USP4-201ENST00000265560 DIAPH2-AS1Q14236 149 aa13.55□□□□□ -0.24
USP4-201ENST00000265560 DMBX1Q8NFW5 382 aa13.55□□□□□ -0.24
USP4-201ENST00000265560 CITED4Q96RK1 184 aa13.55□□□□□ -0.24
USP4-201ENST00000265560 LINC00312Q9Y6C7 94 aa13.55□□□□□ -0.24
USP4-201ENST00000265560 WRBO00258 174 aa13.55□□□□□ -0.24
USP4-201ENST00000265560 ST8SIA2Q92186 375 aa13.55□□□□□ -0.24
USP4-201ENST00000265560 UBQLN2Q9UHD9 624 aa13.55□□□□□ -0.24
USP4-201ENST00000265560 A6NNC1 897 aa13.54□□□□□ -0.24
USP4-201ENST00000265560 BCL2L11O43521 198 aa13.54□□□□□ -0.24
USP4-201ENST00000265560 CHST1O43916 411 aa13.54□□□□□ -0.24
USP4-201ENST00000265560 IAPPP10997 89 aa13.54□□□□□ -0.24
USP4-201ENST00000265560 DUTP33316 252 aaKnown RBP13.54□□□□□ -0.24
USP4-201ENST00000265560 NUP62P37198 522 aaPredicted RBP13.54□□□□□ -0.24
USP4-201ENST00000265560 ZNF767PQ75MW2 155 aa13.54□□□□□ -0.24
USP4-201ENST00000265560 ZNF729A6NN14 1252 aaPredicted RBP13.54□□□□□ -0.24
USP4-201ENST00000265560 RBMXL2O75526 392 aaKnown RBP13.54□□□□□ -0.24
USP4-201ENST00000265560 IFNA7P01567 189 aa13.54□□□□□ -0.24
USP4-201ENST00000265560 PET100P0DJ07 73 aa13.54□□□□□ -0.24
USP4-201ENST00000265560 RPS16P62249 146 aaKnown RBP13.54□□□□□ -0.24
USP4-201ENST00000265560 CST7O76096 145 aa13.53□□□□□ -0.24
USP4-201ENST00000265560 IGHV2-70P01814 119 aa13.53□□□□□ -0.24
USP4-201ENST00000265560 C4BPBP20851 252 aa13.53□□□□□ -0.24
USP4-201ENST00000265560 AGAP20933 346 aa13.53□□□□□ -0.24
USP4-201ENST00000265560 TMEM33P57088 247 aa13.53□□□□□ -0.24
USP4-201ENST00000265560 RPL7L1Q6DKI1 246 aaKnown RBP13.53□□□□□ -0.24
USP4-201ENST00000265560 ODF3L1Q8IXM7 274 aa13.53□□□□□ -0.24
USP4-201ENST00000265560 TMEM217Q8N7C4 229 aa13.53□□□□□ -0.24
USP4-201ENST00000265560 NRGNQ92686 78 aa13.53□□□□□ -0.24
USP4-201ENST00000265560 ARPC5LQ9BPX5 153 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms