RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 CARFQ8N187 725 aa12.17□□□□□ -0.46
SDC1-201ENST00000254351 ST6GALNAC3Q8NDV1 305 aa12.17□□□□□ -0.46
SDC1-201ENST00000254351 MIEN1Q9BRT3 115 aa12.17□□□□□ -0.46
SDC1-201ENST00000254351 TRAPPC2LH3BP13 241 aa12.17□□□□□ -0.46
SDC1-201ENST00000254351 DUX1O43812 170 aa12.17□□□□□ -0.46
SDC1-201ENST00000254351 IER3P46695 156 aa12.17□□□□□ -0.46
SDC1-201ENST00000254351 SERF2P84101 59 aa12.17□□□□□ -0.46
SDC1-201ENST00000254351 FAM27BQ5VT28 67 aa12.17□□□□□ -0.46
SDC1-201ENST00000254351 LINC01551Q86U37 167 aa12.17□□□□□ -0.46
SDC1-201ENST00000254351 TXN2Q99757 166 aa12.17□□□□□ -0.46
SDC1-201ENST00000254351 FGF23Q9GZV9 251 aaPredicted RBP12.17□□□□□ -0.46
SDC1-201ENST00000254351 MUC3AQ02505 3323 aa12.17□□□□□ -0.46
SDC1-201ENST00000254351 hCG_38984A0A1B0GV85 526 aa12.17□□□□□ -0.46
SDC1-201ENST00000254351 SCRG1O75711 98 aa12.17□□□□□ -0.46
SDC1-201ENST00000254351 PTTG1IPP53801 180 aa12.17□□□□□ -0.46
SDC1-201ENST00000254351 GNB1P62873 340 aa12.17□□□□□ -0.46
SDC1-201ENST00000254351 PRDX4Q13162 271 aa12.17□□□□□ -0.46
SDC1-201ENST00000254351 CPEB3Q8NE35 698 aaKnown RBP12.17□□□□□ -0.46
SDC1-201ENST00000254351 MMP17Q9ULZ9 603 aa12.17□□□□□ -0.46
SDC1-201ENST00000254351 OR2W1Q9Y3N9 320 aa12.17□□□□□ -0.46
SDC1-201ENST00000254351 C5orf49A4QMS7 147 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 GGCTO75223 188 aaKnown RBP12.16□□□□□ -0.46
SDC1-201ENST00000254351 CRISP2P16562 243 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 HINT1P49773 126 aaPredicted RBP12.16□□□□□ -0.46
SDC1-201ENST00000254351 SRYQ05066 204 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 MAJINQ3KP22 176 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 SPATA46Q5T0L3 261 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 PCSK4Q6UW60 755 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 AAED1Q7RTV5 226 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 KMT5CQ86Y97 462 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 STPG4Q8N801 248 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 OR1L6Q8NGR2 347 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 WDYHV1Q96HA8 205 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 ZNF552Q9H707 407 aaPredicted RBP12.16□□□□□ -0.46
SDC1-201ENST00000254351 LRP4O75096 1905 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 CXCL13O43927 109 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 ZG16O60844 167 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 KITLGP21583 273 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 TCL1AP56279 114 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 HNRNPKP61978 463 aaKnown RBP eCLIP12.16□□□□□ -0.46
SDC1-201ENST00000254351 MRPS21P82921 87 aaKnown RBP12.16□□□□□ -0.46
SDC1-201ENST00000254351 TMEM183BQ1AE95 376 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 RHBDD2Q6NTF9 364 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 FGFRL1Q8N441 504 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 PLSCR2Q9NRY7 297 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 TP53TG3Q9ULZ0 132 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 SELENOKQ9Y6D0 94 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 DNAJC13O75165 2243 aa12.16□□□□□ -0.46
SDC1-201ENST00000254351 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 NGFP01138 241 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 MSX1P28360 303 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 TPTE2P1Q5T6R2 138 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 ABHD3Q8WU67 409 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 TMEM54Q969K7 222 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 PINX1Q96BK5 328 aaKnown RBP12.15□□□□□ -0.46
SDC1-201ENST00000254351 ANAPC16Q96DE5 110 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 FOXB1Q99853 325 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 WNT5BQ9H1J7 359 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 GPR35Q9HC97 309 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 PPP1R14DQ9NXH3 145 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 PXMP4Q9Y6I8 212 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 LOC400499M0QZD8 3231 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 KIR2DS1A0A191URI9 304 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 FCN1O00602 326 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 RHBDL1O75783 438 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 KIR2DS4P43632 304 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 RPL15P61313 204 aaKnown RBP12.15□□□□□ -0.46
SDC1-201ENST00000254351 KIR2DS1Q14954 304 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 C10orf128Q5T292 105 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 FAM19A2Q8N3H0 131 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 OR5AU1Q8NGC0 362 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 DEPPQ9NTK1 212 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 TP73-AS1Q9UF72 201 aa12.15□□□□□ -0.46
SDC1-201ENST00000254351 NTF3P20783 257 aa12.15□□□□□ -0.47
SDC1-201ENST00000254351 TPPP2P59282 170 aa12.15□□□□□ -0.47
SDC1-201ENST00000254351 OR8B8Q15620 311 aa12.15□□□□□ -0.47
SDC1-201ENST00000254351 HLA-DRB5Q30154 266 aa12.15□□□□□ -0.47
SDC1-201ENST00000254351 Q6ZN92 141 aa12.15□□□□□ -0.47
SDC1-201ENST00000254351 MKXQ8IYA7 352 aa12.15□□□□□ -0.47
SDC1-201ENST00000254351 CCDC74BQ96LY2 380 aa12.15□□□□□ -0.47
SDC1-201ENST00000254351 PSMG3Q9BT73 122 aaPredicted RBP12.15□□□□□ -0.47
SDC1-201ENST00000254351 OR2H1Q9GZK4 316 aa12.15□□□□□ -0.47
SDC1-201ENST00000254351 TRAPPC2LQ9UL33 140 aa12.15□□□□□ -0.47
SDC1-201ENST00000254351 CHCHD2Q9Y6H1 151 aaPredicted RBP12.15□□□□□ -0.47
SDC1-201ENST00000254351 CTXND1A0A1B0GTU2 59 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 MDFIC2A0A1B0GVS7 189 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 F6UZH7 168 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 TFF1P04155 84 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 SLC25A6P12236 298 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 MSMO1Q15800 293 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 LTC4SQ16873 150 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 FAM234AQ9H0X4 552 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 TMEM38BQ9NVV0 291 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 TRBV20OR9-2A0A075B6H5 130 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 C20orf202A1L168 122 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 IGHV3-13P01766 116 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 IGHV3-7P01780 117 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 IGHEP01854 428 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 UMODP07911 640 aa12.14□□□□□ -0.47
SDC1-201ENST00000254351 CA6P23280 308 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms