RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 DCAF10Q5QP82 559 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 PRR31Q5SQ13 230 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 DHRS13Q6UX07 377 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 C1QL4Q86Z23 238 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 OR5A2Q8NGI9 324 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 WDR61Q9GZS3 305 aaKnown RBP8.96□□□□□ -0.98
USP28-201ENST00000003302 ARRDC1-AS1Q9H2J1 176 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 SDF2L1Q9HCN8 221 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 ZNRD1Q9P1U0 126 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 SPTA1P02549 2419 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 DYSFO75923 2080 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 TRAV38-1A0A0B4J264 116 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 MAP1LC3B2A6NCE7 125 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 ST8SIA5O15466 376 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 MDH2P40926 338 aaKnown RBP8.96□□□□□ -0.98
USP28-201ENST00000003302 UBE2G2P60604 165 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 COL10A1Q03692 680 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 FAM201AQ5SY85 155 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 DUX4L9Q6RFH8 374 aaPredicted RBP8.96□□□□□ -0.98
USP28-201ENST00000003302 TCTEX1D2Q8WW35 142 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 COQ2Q96H96 371 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 MAP1LC3BQ9GZQ8 125 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 GAR1Q9NY12 217 aaKnown RBP8.96□□□□□ -0.98
USP28-201ENST00000003302 COLQQ9Y215 455 aaPredicted RBP8.96□□□□□ -0.98
USP28-201ENST00000003302 TRAV3A0A0B4J244 114 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 PTBP3O95758 552 aaKnown RBP8.95□□□□□ -0.98
USP28-201ENST00000003302 CEACAM1P13688 526 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 ZNF497Q6ZNH5 498 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 C11orf53Q8IXP5 236 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 PFDN5Q99471 154 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 PCGF1Q9BSM1 259 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 SLC25A31Q9H0C2 315 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 OR5H1A6NKK0 313 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 DNPH1O43598 174 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 HOXB1P14653 301 aaPredicted RBP8.95□□□□□ -0.98
USP28-201ENST00000003302 C16orf82Q7Z2V1 217 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 STX12Q86Y82 276 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 LILRB2Q8N423 598 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 GAB2Q9UQC2 676 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 ZGRF1Q86YA3 2104 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 TRBV20OR9-2A0A075B6H5 130 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 PMS2P5A8MQ11 134 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 IL24Q13007 206 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 SLC25A40Q8TBP6 338 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 FAM122AQ96E09 287 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 KIR2DS1A0A191URI9 304 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 IFNA17P01571 189 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 KIR2DS4P43632 304 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 GNG3P63215 75 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 TGFBR3Q03167 851 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 SSPNQ14714 243 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 KIR2DS1Q14954 304 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 LRRC75BQ2VPJ9 315 aa8.95□□□□□ -0.98
USP28-201ENST00000003302 TAF15Q92804 592 aaKnown RBP eCLIP8.95□□□□□ -0.98
USP28-201ENST00000003302 SEC14L6B5MCN3 397 aa8.94□□□□□ -0.98
USP28-201ENST00000003302 MEOX1P50221 254 aa8.94□□□□□ -0.98
USP28-201ENST00000003302 S100A12P80511 92 aa8.94□□□□□ -0.98
USP28-201ENST00000003302 TGIF2LYQ8IUE0 185 aa8.94□□□□□ -0.98
USP28-201ENST00000003302 LFNGQ8NES3 379 aa8.94□□□□□ -0.98
USP28-201ENST00000003302 TMEM45BQ96B21 275 aa8.94□□□□□ -0.98
USP28-201ENST00000003302 GUCD1Q96NT3 240 aa8.94□□□□□ -0.98
USP28-201ENST00000003302 TREM2Q9NZC2 230 aa8.94□□□□□ -0.98
USP28-201ENST00000003302 AKAP6Q13023 2319 aa8.94□□□□□ -0.98
USP28-201ENST00000003302 ERVK11-1P61568 191 aa8.94□□□□□ -0.98
USP28-201ENST00000003302 CABLES2Q9BTV7 478 aa8.94□□□□□ -0.98
USP28-201ENST00000003302 AHRRA9YTQ3 701 aa8.94□□□□□ -0.98
USP28-201ENST00000003302 ZNF737O75373 536 aa8.94□□□□□ -0.98
USP28-201ENST00000003302 ATP5G3P48201 142 aa8.94□□□□□ -0.98
USP28-201ENST00000003302 PLGLB1Q02325 96 aa8.94□□□□□ -0.98
USP28-201ENST00000003302 FOXF2Q12947 444 aa8.94□□□□□ -0.98
USP28-201ENST00000003302 TCF23Q7RTU1 214 aa8.94□□□□□ -0.98
USP28-201ENST00000003302 OR13A1Q8NGR1 328 aa8.94□□□□□ -0.98
USP28-201ENST00000003302 LHX4Q969G2 390 aa8.94□□□□□ -0.98
USP28-201ENST00000003302 SMPD2O60906 423 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 NXPH2O95156 264 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 IGHV1-2P23083 117 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 RPL23P62829 140 aaKnown RBP8.93□□□□□ -0.98
USP28-201ENST00000003302 SLC38A11Q08AI6 406 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 GNPNAT1Q96EK6 184 aaPredicted RBP8.93□□□□□ -0.98
USP28-201ENST00000003302 SPIN2AQ99865 258 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 SPIN2BQ9BPZ2 258 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 PARLQ9H300 379 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 PATZ1Q9HBE1 687 aaKnown RBP8.93□□□□□ -0.98
USP28-201ENST00000003302 A0A1W2PPQ1 181 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 IL2RGP31785 369 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 CHRNA7P36544 502 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 BAXQ07812 192 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 ABHD17BQ5VST6 288 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 VWA1Q6PCB0 445 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 FAM185AQ8N0U4 392 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 FAM173AQ9BQD7 235 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 GFOD1Q9NXC2 390 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 ZMAT5Q9UDW3 170 aaKnown RBP8.93□□□□□ -0.98
USP28-201ENST00000003302 ZNF391Q9UJN7 358 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 ANKRD30BLA7E2S9 258 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 TLE4Q04727 773 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 TNFRSF9Q07011 255 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 TMEM37Q8WXS4 190 aa8.93□□□□□ -0.98
USP28-201ENST00000003302 BCL2L2Q92843 193 aaPredicted RBP8.93□□□□□ -0.98
USP28-201ENST00000003302 SMIM7Q9BQ49 75 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms