RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 TAF9BQ9HBM6 251 aa15.3■□□□□ 0.04
CLN3-260ENST00000637578 MOB4Q9Y3A3 225 aa15.3■□□□□ 0.04
CLN3-260ENST00000637578 CTDSP2O14595 271 aa15.29■□□□□ 0.04
CLN3-260ENST00000637578 XRCC3O43542 346 aa15.29■□□□□ 0.04
CLN3-260ENST00000637578 LPLP06858 475 aa15.29■□□□□ 0.04
CLN3-260ENST00000637578 MRPS15P82914 257 aaKnown RBP15.29■□□□□ 0.04
CLN3-260ENST00000637578 CD83Q01151 205 aa15.29■□□□□ 0.04
CLN3-260ENST00000637578 ARFRP1Q13795 201 aa15.29■□□□□ 0.04
CLN3-260ENST00000637578 CT45A1Q5HYN5 189 aa15.29■□□□□ 0.04
CLN3-260ENST00000637578 HACD4Q5VWC8 232 aa15.29■□□□□ 0.04
CLN3-260ENST00000637578 MOB1BQ7L9L4 216 aa15.29■□□□□ 0.04
CLN3-260ENST00000637578 C5orf24Q7Z6I8 188 aa15.29■□□□□ 0.04
CLN3-260ENST00000637578 CT45A3Q8NHU0 189 aa15.29■□□□□ 0.04
CLN3-260ENST00000637578 CITED2Q99967 270 aaPredicted RBP15.29■□□□□ 0.04
CLN3-260ENST00000637578 NOTCH1P46531 2555 aa15.29■□□□□ 0.04
CLN3-260ENST00000637578 SLC31A2O15432 143 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 OPN1MWP04001 364 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 OPN1MW2P0DN77 364 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 OPN1MW3P0DN78 364 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 DEFA6Q01524 100 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 TMEM69Q5SWH9 247 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 PRR18Q8N4B5 295 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 OR5AU1Q8NGC0 362 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 NUDCD2Q8WVJ2 157 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 RTN4IP1Q8WWV3 396 aaPredicted RBP15.28■□□□□ 0.04
CLN3-260ENST00000637578 MIXL1Q9H2W2 232 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 AUNIPQ9H7T9 357 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 KCNIP1Q9NZI2 227 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 GNG12Q9UBI6 72 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 SH2D7A6NKC9 451 aaPredicted RBP15.28■□□□□ 0.04
CLN3-260ENST00000637578 FAM25AB3EWG3 89 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 FAM25CB3EWG5 89 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 FAM25GB3EWG6 89 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 RGS5O15539 181 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 FGF16O43320 207 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 IGKV1D-33P01593 117 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 IGKV1-33P01594 117 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 FCGR3AP08637 254 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 TMEM11P17152 192 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 IL3RAP26951 378 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 REG1BP48304 166 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 HTD2P86397 168 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 HMGN3Q15651 99 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 MORN2Q502X0 79 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 LAX1Q8IWV1 398 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 Q8N6K4 173 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 C5orf56Q8N8D9 126 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 C6orf62Q9GZU0 229 aaPredicted RBP15.28■□□□□ 0.04
CLN3-260ENST00000637578 Q9N2K0 584 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 OR2S2Q9NQN1 319 aa15.28■□□□□ 0.04
CLN3-260ENST00000637578 PTHLHP12272 177 aa15.27■□□□□ 0.03
CLN3-260ENST00000637578 TAS2R20P59543 309 aa15.27■□□□□ 0.03
CLN3-260ENST00000637578 GNG2P59768 71 aa15.27■□□□□ 0.03
CLN3-260ENST00000637578 HES1Q14469 280 aa15.27■□□□□ 0.03
CLN3-260ENST00000637578 PNLIPRP3Q17RR3 467 aa15.27■□□□□ 0.03
CLN3-260ENST00000637578 TCTEX1D4Q5JR98 221 aa15.27■□□□□ 0.03
CLN3-260ENST00000637578 LY6G6FQ5SQ64 297 aa15.27■□□□□ 0.03
CLN3-260ENST00000637578 MOB3BQ86TA1 216 aa15.27■□□□□ 0.03
CLN3-260ENST00000637578 LYG1Q8N1E2 194 aa15.27■□□□□ 0.03
CLN3-260ENST00000637578 MCFD2Q8NI22 146 aa15.27■□□□□ 0.03
CLN3-260ENST00000637578 NXF2Q9GZY0 626 aaKnown RBP15.27■□□□□ 0.03
CLN3-260ENST00000637578 ZNF230Q9UIE0 474 aaPredicted RBP15.27■□□□□ 0.03
CLN3-260ENST00000637578 A6NHS1 94 aa15.26■□□□□ 0.03
CLN3-260ENST00000637578 SSX5O60225 188 aa15.26■□□□□ 0.03
CLN3-260ENST00000637578 CD1BP29016 333 aa15.26■□□□□ 0.03
CLN3-260ENST00000637578 TALDO1P37837 337 aa15.26■□□□□ 0.03
CLN3-260ENST00000637578 CENPVQ7Z7K6 275 aaPredicted RBP15.26■□□□□ 0.03
CLN3-260ENST00000637578 OR10V1Q8NGI7 309 aa15.26■□□□□ 0.03
CLN3-260ENST00000637578 MAFIPQ8WZ33 124 aa15.26■□□□□ 0.03
CLN3-260ENST00000637578 EAF1Q96JC9 268 aaPredicted RBP15.26■□□□□ 0.03
CLN3-260ENST00000637578 JPT1Q9UK76 154 aa15.26■□□□□ 0.03
CLN3-260ENST00000637578 DTYMKP23919 212 aa15.25■□□□□ 0.03
CLN3-260ENST00000637578 HLA-DRB3P79483 266 aa15.25■□□□□ 0.03
CLN3-260ENST00000637578 PITPNAQ00169 270 aa15.25■□□□□ 0.03
CLN3-260ENST00000637578 HNF4GQ14541 408 aa15.25■□□□□ 0.03
CLN3-260ENST00000637578 NSUN5P1Q3KNT7 163 aa15.25■□□□□ 0.03
CLN3-260ENST00000637578 EXTL2Q9UBQ6 330 aa15.25■□□□□ 0.03
CLN3-260ENST00000637578 MGAT4AQ9UM21 535 aa15.25■□□□□ 0.03
CLN3-260ENST00000637578 TXNL1O43396 289 aa15.24■□□□□ 0.03
CLN3-260ENST00000637578 YPEL1O60688 119 aa15.24■□□□□ 0.03
CLN3-260ENST00000637578 GNMTQ14749 295 aa15.24■□□□□ 0.03
CLN3-260ENST00000637578 OR52L2PQ8NGH6 319 aa15.24■□□□□ 0.03
CLN3-260ENST00000637578 GALMQ96C23 342 aa15.24■□□□□ 0.03
CLN3-260ENST00000637578 YPEL2Q96QA6 119 aa15.24■□□□□ 0.03
CLN3-260ENST00000637578 PLSCR3Q9NRY6 295 aa15.24■□□□□ 0.03
CLN3-260ENST00000637578 MRPS7Q9Y2R9 242 aaKnown RBP15.24■□□□□ 0.03
CLN3-260ENST00000637578 IGHV3-72A0A0B4J1Y9 119 aa15.24■□□□□ 0.03
CLN3-260ENST00000637578 LANCL1O43813 399 aa15.24■□□□□ 0.03
CLN3-260ENST00000637578 HLA-DQB1P01920 261 aa15.24■□□□□ 0.03
CLN3-260ENST00000637578 SCTP09683 121 aa15.24■□□□□ 0.03
CLN3-260ENST00000637578 CNIH2Q6PI25 160 aa15.24■□□□□ 0.03
CLN3-260ENST00000637578 TGIF2LXQ8IUE1 241 aa15.24■□□□□ 0.03
CLN3-260ENST00000637578 ODF3L1Q8IXM7 274 aa15.24■□□□□ 0.03
CLN3-260ENST00000637578 OR4F17Q8NGA8 305 aa15.24■□□□□ 0.03
CLN3-260ENST00000637578 OR2T10Q8NGZ9 312 aa15.24■□□□□ 0.03
CLN3-260ENST00000637578 IL1F10Q8WWZ1 152 aa15.24■□□□□ 0.03
CLN3-260ENST00000637578 OR4F4Q96R69 305 aa15.24■□□□□ 0.03
CLN3-260ENST00000637578 ADAM30Q9UKF2 790 aa15.24■□□□□ 0.03
CLN3-260ENST00000637578 TRDCB7Z8K6 153 aa15.23■□□□□ 0.03
CLN3-260ENST00000637578 IGHG2P01859 326 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms