RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 SPSB3Q6PJ21 355 aa12.32□□□□□ -0.44
SHROOM1-208ENST00000617339 APOBEC3DQ96AK3 386 aaPredicted RBP12.32□□□□□ -0.44
SHROOM1-208ENST00000617339 TP53TG5Q9Y2B4 290 aa12.32□□□□□ -0.44
SHROOM1-208ENST00000617339 CHD3Q12873 2000 aaKnown RBP12.32□□□□□ -0.44
SHROOM1-208ENST00000617339 CRYM-AS1A6NIL9 109 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 PRRG2O14669 202 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 PDCD6O75340 191 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 FAM87AP0C7U9 286 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 CD200P41217 278 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 UCP2P55851 309 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 SELENOVP59797 346 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 HLA-DRB3P79483 266 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 MPV17LQ2QL34 196 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 RFESDQ8TAC1 157 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 WDYHV1Q96HA8 205 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 CBY1Q9Y3M2 126 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 AMBPP02760 352 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 MAS1LP35410 378 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 RBM11P57052 281 aaKnown RBP12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 FAM189A2Q15884 450 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 FBXW9Q5XUX1 488 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 LCN15Q6UWW0 184 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 OR5C1Q8NGR4 320 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 SLC2A9Q9NRM0 540 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 ANKHD1Q8IWZ3 2542 aaKnown RBP12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 CEACAM18A8MTB9 384 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 RPRMLQ8N4K4 120 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 OR5T1Q8NG75 326 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 NDUFAF3Q9BU61 184 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 ARV1Q9H2C2 271 aa12.31□□□□□ -0.44
SHROOM1-208ENST00000617339 WNT9BO14905 357 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 DNPH1O43598 174 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 OR4A8P0C604 315 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 ZNF133P52736 654 aaPredicted RBP12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 VAMP2P63027 116 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 RNPS1Q15287 305 aaKnown RBP12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 C20orf204Q6ZNR8 217 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 MRPL41Q8IXM3 137 aaKnown RBP12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 CMTM1Q8IZ96 169 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 TMEM37Q8WXS4 190 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 CCL28Q9NRJ3 127 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 PPP1R3CQ9UQK1 317 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 IGSF23A1L1A6 192 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 CD55P08174 381 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 SSC4DQ8WTU2 575 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 ARFGEF3Q5TH69 2177 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 XKRY2A2RUG3 117 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 CTSDP07339 412 aaPredicted RBP12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 P2RY6Q15077 328 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 FOXL2NBQ6ZUU3 175 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 SLC25A40Q8TBP6 338 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 REPIN1Q9BWE0 567 aaKnown RBP12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 COL25A1Q9BXS0 654 aaPredicted RBP12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 FAM234AQ9H0X4 552 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 NAA60Q9H7X0 242 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 LAMP3Q9UQV4 416 aa12.3□□□□□ -0.44
SHROOM1-208ENST00000617339 NKX2-6A6NCS4 301 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 WDR1O75083 606 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 IGLV3-1P01715 115 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 ETFRF1Q6IPR1 90 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 Q6ZPA2 131 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 LGI3Q8N145 548 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 OR2C3Q8N628 320 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 PRSS33Q8NF86 280 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 POM121L2Q96KW2 1035 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 SNHG12Q9BXW3 62 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 A0A1B0GWJ7 208 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 SCGB1D1O95968 90 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 RPL29P47914 159 aaKnown RBP12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 COL10A1Q03692 680 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 TCF15Q12870 199 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 ADIRFQ15847 76 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 OR4X1Q8NH49 305 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 C1QTNF5Q9BXJ0 243 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 TRAPPC2LQ9UL33 140 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 DEFB108AA8MXU0 73 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 PROB1E7EW31 1015 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 K7EM74 188 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 TK1P04183 234 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 CEACAM1P13688 526 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 DYNLT3P51808 116 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 PMS2P11Q13670 270 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 TMEM187Q14656 261 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 JOSD1Q15040 202 aaPredicted RBP12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 GPR157Q5UAW9 335 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 GAPTQ8N292 157 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 SLC35G3Q8N808 338 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 MDS2Q8NDY4 140 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 TMEM171Q8WVE6 324 aa12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 ERRFI1Q9UJM3 462 aaPredicted RBP12.29□□□□□ -0.44
SHROOM1-208ENST00000617339 PTPN13Q12923 2485 aa12.28□□□□□ -0.44
SHROOM1-208ENST00000617339 DEGS1O15121 323 aa12.28□□□□□ -0.44
SHROOM1-208ENST00000617339 SPRY3O43610 288 aa12.28□□□□□ -0.44
SHROOM1-208ENST00000617339 ARR3P36575 388 aa12.28□□□□□ -0.44
SHROOM1-208ENST00000617339 PRAMEF6Q5VXH4 476 aa12.28□□□□□ -0.44
SHROOM1-208ENST00000617339 TP53RKQ96S44 253 aa12.28□□□□□ -0.44
SHROOM1-208ENST00000617339 IGKV1D-13A0A0B4J2D9 117 aa12.28□□□□□ -0.44
SHROOM1-208ENST00000617339 RPL36A-HNRNPH2H7BZ11 118 aa12.28□□□□□ -0.44
SHROOM1-208ENST00000617339 CLDN34H7C241 214 aa12.28□□□□□ -0.44
SHROOM1-208ENST00000617339 IGKV1-13P0DP09 117 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms