RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 CXCL12P48061 93 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 JOSD1Q15040 202 aaPredicted RBP9.8□□□□□ -0.84
CLN3-238ENST00000569430 RTL8AQ9BWD3 113 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 ZNF391Q9UJN7 358 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 HEATR1Q9H583 2144 aaKnown RBP9.8□□□□□ -0.84
CLN3-238ENST00000569430 NPIPB13A6NJU9 1138 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 NPIPB4C9JG80 1138 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 E9PLN8 166 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 ZNF253O75346 499 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 HSBP1O75506 76 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 FGF5P12034 268 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 DTD1Q8TEA8 209 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 EGLN1Q9GZT9 426 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 SLC35D1Q9NTN3 355 aa9.8□□□□□ -0.84
CLN3-238ENST00000569430 GPR179Q6PRD1 2367 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 H0Y980 276 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 WNT5AP41221 380 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 RANP62826 216 aaKnown RBP9.79□□□□□ -0.84
CLN3-238ENST00000569430 TMEM164Q5U3C3 297 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 LYSMD4Q5XG99 296 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 WDFY1Q8IWB7 410 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 C1orf147Q96MC9 270 aaPredicted RBP9.79□□□□□ -0.84
CLN3-238ENST00000569430 AKIRIN1Q9H9L7 192 aaPredicted RBP9.79□□□□□ -0.84
CLN3-238ENST00000569430 DUSP13Q9UII6 198 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 PSG11Q9UQ72 335 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 SNURFLB1AK76 121 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 KBTBD11O94819 623 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 UCP3P55916 312 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 TECTBQ96PL2 329 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 OR1A1Q9P1Q5 309 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 EP300Q09472 2414 aaPredicted RBP9.79□□□□□ -0.84
CLN3-238ENST00000569430 WNK2Q9Y3S1 2297 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 TRAV38-1A0A0B4J264 116 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 SPINT2O43291 252 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 TIAF1O95411 115 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 GPR12P47775 334 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 NXPH1P58417 271 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 HGFACQ04756 655 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 DMRTA1Q5VZB9 504 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 ZNF664Q8N3J9 261 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 C11orf42Q8N5U0 333 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 STARD4Q96DR4 205 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 ACY3Q96HD9 319 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 LIME1Q9H400 295 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 MANBALQ9NQG1 85 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 POLDIP2Q9Y2S7 368 aa9.79□□□□□ -0.84
CLN3-238ENST00000569430 NCOA6Q14686 2063 aaPredicted RBP9.79□□□□□ -0.84
CLN3-238ENST00000569430 SIAH2O43255 324 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 TIMM8AO60220 97 aaPredicted RBP9.78□□□□□ -0.84
CLN3-238ENST00000569430 FCGR3BO75015 233 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 DEFA4P12838 97 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 PMELP40967 661 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 KIAA1644Q3SXP7 199 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 OR4D5Q8NGN0 318 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 MRGPRDQ8TDS7 321 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 TAAR3PQ9P1P4 343 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 ATP23Q9Y6H3 246 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 IGKV1-12A0A0C4DH73 117 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 CDIPTO14735 213 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 IGKV1D-12P01611 117 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 GCH1P30793 250 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 MRPL54Q6P161 138 aaKnown RBP9.78□□□□□ -0.84
CLN3-238ENST00000569430 SPSB3Q6PJ21 355 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 VHLLQ6RSH7 139 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 FGFRL1Q8N441 504 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 P2RX4Q99571 388 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 OCIAD1Q9NX40 245 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 SPTBN1Q01082 2364 aaKnown RBP9.78□□□□□ -0.84
CLN3-238ENST00000569430 PCNX3Q9H6A9 2034 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 LOC102724200A0A096LPH7 203 aaPredicted RBP9.78□□□□□ -0.84
CLN3-238ENST00000569430 APOA2P02652 100 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 CD55P08174 381 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 FABP6P51161 128 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 OR4C5Q8NGB2 326 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 GPR35Q9HC97 309 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 ARL2-SNX15V9GYD0 113 aa9.78□□□□□ -0.84
CLN3-238ENST00000569430 A6NNC1 897 aa9.77□□□□□ -0.85
CLN3-238ENST00000569430 M0QZK8 103 aa9.77□□□□□ -0.85
CLN3-238ENST00000569430 GGCTO75223 188 aaKnown RBP9.77□□□□□ -0.85
CLN3-238ENST00000569430 ACSM6Q6P461 480 aa9.77□□□□□ -0.85
CLN3-238ENST00000569430 TPRX1Q8N7U7 411 aa9.77□□□□□ -0.85
CLN3-238ENST00000569430 OR51G1Q8NGK1 321 aa9.77□□□□□ -0.85
CLN3-238ENST00000569430 IMMP2LQ96T52 175 aa9.77□□□□□ -0.85
CLN3-238ENST00000569430 CEACAM18A8MTB9 384 aa9.77□□□□□ -0.85
CLN3-238ENST00000569430 C3orf80F5H4A9 247 aa9.77□□□□□ -0.85
CLN3-238ENST00000569430 LIFP15018 202 aa9.77□□□□□ -0.85
CLN3-238ENST00000569430 CBLN1P23435 193 aa9.77□□□□□ -0.85
CLN3-238ENST00000569430 UCP1P25874 307 aa9.77□□□□□ -0.85
CLN3-238ENST00000569430 FGF12P61328 243 aa9.77□□□□□ -0.85
CLN3-238ENST00000569430 RPL23P62829 140 aaKnown RBP9.77□□□□□ -0.85
CLN3-238ENST00000569430 CYP2G1PQ6ZSU1 146 aa9.77□□□□□ -0.85
CLN3-238ENST00000569430 OR1L6Q8NGR2 347 aa9.77□□□□□ -0.85
CLN3-238ENST00000569430 GATAD1Q8WUU5 269 aa9.77□□□□□ -0.85
CLN3-238ENST00000569430 IGKV1-27A0A075B6S5 117 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 PGPEP1LA6NFU8 196 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 DIRC3C9JPN6 131 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 M0R1X1 148 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 HPRT1P00492 218 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 OR4A8P0C604 315 aa9.76□□□□□ -0.85
CLN3-238ENST00000569430 NUBP1P53384 320 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms