RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 FABP7O15540 132 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 HPGDSO60760 199 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 GABARAPO95166 117 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 SAA2P0DJI9 122 aaPredicted RBP11.03□□□□□ -0.64
CLN3-235ENST00000568497 VSIG10L2P0DP72 767 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 CNTFRP26992 372 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 ABCA11PQ4W5N1 156 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 C10orf99Q6UWK7 81 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 ANKRD13BQ86YJ7 626 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 LINC00311Q8N616 119 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 RTN4IP1Q8WWV3 396 aaPredicted RBP11.03□□□□□ -0.64
CLN3-235ENST00000568497 SLC25A46Q96AG3 418 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 R3HDM4Q96D70 268 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 C5orf30Q96GV9 206 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 DCSTAMPQ9H295 470 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 ABRACLQ9P1F3 81 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 LINC00527Q9UJ94 153 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 SPATA2Q9UM82 520 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 RYR2Q92736 4967 aa11.03□□□□□ -0.64
CLN3-235ENST00000568497 LINC01548A6NM66 108 aa11.02□□□□□ -0.65
CLN3-235ENST00000568497 HSPA12AO43301 675 aa11.02□□□□□ -0.65
CLN3-235ENST00000568497 TMEM11P17152 192 aa11.02□□□□□ -0.65
CLN3-235ENST00000568497 TALDO1P37837 337 aa11.02□□□□□ -0.65
CLN3-235ENST00000568497 CEACAM3P40198 252 aa11.02□□□□□ -0.65
CLN3-235ENST00000568497 C11orf88Q6PI97 169 aa11.02□□□□□ -0.65
CLN3-235ENST00000568497 TRAT1Q6PIZ9 186 aa11.02□□□□□ -0.65
CLN3-235ENST00000568497 KLHDC1Q8N7A1 406 aa11.02□□□□□ -0.65
CLN3-235ENST00000568497 RDH8Q9NYR8 311 aa11.02□□□□□ -0.65
CLN3-235ENST00000568497 JPT1Q9UK76 154 aa11.02□□□□□ -0.65
CLN3-235ENST00000568497 H3BUI4 141 aa11.01□□□□□ -0.65
CLN3-235ENST00000568497 YPEL1O60688 119 aa11.01□□□□□ -0.65
CLN3-235ENST00000568497 GAPDHP04406 335 aaKnown RBP11.01□□□□□ -0.65
CLN3-235ENST00000568497 LPLP06858 475 aa11.01□□□□□ -0.65
CLN3-235ENST00000568497 IGLL1P15814 213 aa11.01□□□□□ -0.65
CLN3-235ENST00000568497 CD33P20138 364 aa11.01□□□□□ -0.65
CLN3-235ENST00000568497 BRS3P32247 399 aa11.01□□□□□ -0.65
CLN3-235ENST00000568497 MNDAP41218 407 aa11.01□□□□□ -0.65
CLN3-235ENST00000568497 GNG2P59768 71 aa11.01□□□□□ -0.65
CLN3-235ENST00000568497 MRPS15P82914 257 aaKnown RBP11.01□□□□□ -0.65
CLN3-235ENST00000568497 HTD2P86397 168 aa11.01□□□□□ -0.65
CLN3-235ENST00000568497 AANATQ16613 207 aa11.01□□□□□ -0.65
CLN3-235ENST00000568497 HACD4Q5VWC8 232 aa11.01□□□□□ -0.65
CLN3-235ENST00000568497 TGIF2LXQ8IUE1 241 aa11.01□□□□□ -0.65
CLN3-235ENST00000568497 OR2AK2Q8NG84 335 aa11.01□□□□□ -0.65
CLN3-235ENST00000568497 OR4C13Q8NGP0 309 aa11.01□□□□□ -0.65
CLN3-235ENST00000568497 PTX4Q96A99 478 aa11.01□□□□□ -0.65
CLN3-235ENST00000568497 EAF1Q96JC9 268 aaPredicted RBP11.01□□□□□ -0.65
CLN3-235ENST00000568497 YPEL2Q96QA6 119 aa11.01□□□□□ -0.65
CLN3-235ENST00000568497 GPHA2Q96T91 129 aa11.01□□□□□ -0.65
CLN3-235ENST00000568497 ZNF251Q9BRH9 671 aa11.01□□□□□ -0.65
CLN3-235ENST00000568497 FAM90A9PA6NNJ1 464 aa11□□□□□ -0.65
CLN3-235ENST00000568497 C3orf84H3BNL1 204 aa11□□□□□ -0.65
CLN3-235ENST00000568497 PROP1O75360 226 aa11□□□□□ -0.65
CLN3-235ENST00000568497 PEX14O75381 377 aa11□□□□□ -0.65
CLN3-235ENST00000568497 OR8U9P0C7N5 309 aa11□□□□□ -0.65
CLN3-235ENST00000568497 NFYAP23511 347 aaPredicted RBP11□□□□□ -0.65
CLN3-235ENST00000568497 DYNLT3P51808 116 aa11□□□□□ -0.65
CLN3-235ENST00000568497 F2RL1P55085 397 aa11□□□□□ -0.65
CLN3-235ENST00000568497 ZNF816Q0VGE8 651 aaPredicted RBP11□□□□□ -0.65
CLN3-235ENST00000568497 ARSJQ5FYB0 599 aaPredicted RBP11□□□□□ -0.65
CLN3-235ENST00000568497 MOB1BQ7L9L4 216 aa11□□□□□ -0.65
CLN3-235ENST00000568497 OR4F17Q8NGA8 305 aa11□□□□□ -0.65
CLN3-235ENST00000568497 OR8U1Q8NH10 309 aa11□□□□□ -0.65
CLN3-235ENST00000568497 RBM14Q96PK6 669 aaKnown RBP11□□□□□ -0.65
CLN3-235ENST00000568497 OR4F4Q96R69 305 aa11□□□□□ -0.65
CLN3-235ENST00000568497 B9D2Q9BPU9 175 aa11□□□□□ -0.65
CLN3-235ENST00000568497 NABP2Q9BQ15 211 aa11□□□□□ -0.65
CLN3-235ENST00000568497 NPFFR1Q9GZQ6 430 aa11□□□□□ -0.65
CLN3-235ENST00000568497 RIMS4Q9H426 269 aaPredicted RBP11□□□□□ -0.65
CLN3-235ENST00000568497 AUNIPQ9H7T9 357 aa11□□□□□ -0.65
CLN3-235ENST00000568497 SERTAD4Q9NUC0 356 aa11□□□□□ -0.65
CLN3-235ENST00000568497 MRPS7Q9Y2R9 242 aaKnown RBP11□□□□□ -0.65
CLN3-235ENST00000568497 ETV7Q9Y603 341 aa11□□□□□ -0.65
CLN3-235ENST00000568497 DYNC2H1Q8NCM8 4307 aaKnown RBP11□□□□□ -0.65
CLN3-235ENST00000568497 TENM2Q9NT68 2774 aa10.99□□□□□ -0.65
CLN3-235ENST00000568497 WI2-2373I1.2A0A1W2PRP0 233 aa10.99□□□□□ -0.65
CLN3-235ENST00000568497 CT45A6P0DMU7 189 aa10.99□□□□□ -0.65
CLN3-235ENST00000568497 CT45A5P0DMU8 189 aa10.99□□□□□ -0.65
CLN3-235ENST00000568497 CT45A7P0DMV0 189 aa10.99□□□□□ -0.65
CLN3-235ENST00000568497 ELK1P19419 428 aa10.99□□□□□ -0.65
CLN3-235ENST00000568497 IL3RAP26951 378 aa10.99□□□□□ -0.65
CLN3-235ENST00000568497 RAB7AP51149 207 aa10.99□□□□□ -0.65
CLN3-235ENST00000568497 TAS2R20P59543 309 aa10.99□□□□□ -0.65
CLN3-235ENST00000568497 Q3ZCU0 254 aa10.99□□□□□ -0.65
CLN3-235ENST00000568497 UBE2NLQ5JXB2 153 aa10.99□□□□□ -0.65
CLN3-235ENST00000568497 CCDC144NLQ6NUI1 221 aa10.99□□□□□ -0.65
CLN3-235ENST00000568497 FAM131AQ6UXB0 335 aa10.99□□□□□ -0.65
CLN3-235ENST00000568497 SNX29P2Q8IUI4 249 aa10.99□□□□□ -0.65
CLN3-235ENST00000568497 OR2T6Q8NHC8 308 aa10.99□□□□□ -0.65
CLN3-235ENST00000568497 NOL4LQ96MY1 436 aaPredicted RBP10.99□□□□□ -0.65
CLN3-235ENST00000568497 NCBP2LA6PVI3 153 aaKnown RBP10.98□□□□□ -0.65
CLN3-235ENST00000568497 SERPINE3A8MV23 424 aa10.98□□□□□ -0.65
CLN3-235ENST00000568497 FBXO24O75426 580 aa10.98□□□□□ -0.65
CLN3-235ENST00000568497 OR2F2O95006 317 aa10.98□□□□□ -0.65
CLN3-235ENST00000568497 GSTP1P09211 210 aaKnown RBP10.98□□□□□ -0.65
CLN3-235ENST00000568497 FAM106CPP0CH98 169 aa10.98□□□□□ -0.65
CLN3-235ENST00000568497 CD28P10747 220 aa10.98□□□□□ -0.65
CLN3-235ENST00000568497 ZBTB25P24278 435 aa10.98□□□□□ -0.65
CLN3-235ENST00000568497 KIR2DS4P43632 304 aa10.98□□□□□ -0.65
CLN3-235ENST00000568497 LSAMPQ13449 338 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms