RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 MAP2K4P45985 399 aa17.6■□□□□ 0.41
CLN3-232ENST00000568443 OR8U1Q8NH10 309 aa17.6■□□□□ 0.41
CLN3-232ENST00000568443 SLC23A1Q9UHI7 598 aa17.6■□□□□ 0.41
CLN3-232ENST00000568443 AK3Q9UIJ7 227 aa17.6■□□□□ 0.41
CLN3-232ENST00000568443 TRBV6-6A0A0A6YYG2 114 aa17.59■□□□□ 0.41
CLN3-232ENST00000568443 FABP5Q01469 135 aa17.59■□□□□ 0.41
CLN3-232ENST00000568443 DEFB136Q30KP8 78 aa17.59■□□□□ 0.41
CLN3-232ENST00000568443 LIN54Q6MZP7 749 aa17.59■□□□□ 0.41
CLN3-232ENST00000568443 FAM71F2Q6NXP2 309 aa17.59■□□□□ 0.41
CLN3-232ENST00000568443 HDHD3Q9BSH5 251 aaPredicted RBP17.59■□□□□ 0.41
CLN3-232ENST00000568443 OR51J1Q9H342 316 aa17.59■□□□□ 0.41
CLN3-232ENST00000568443 GHITMQ9H3K2 345 aa17.59■□□□□ 0.41
CLN3-232ENST00000568443 ACOT13Q9NPJ3 140 aa17.59■□□□□ 0.41
CLN3-232ENST00000568443 KIAA1456Q9P272 454 aa17.59■□□□□ 0.41
CLN3-232ENST00000568443 ZMAT5Q9UDW3 170 aaKnown RBP17.59■□□□□ 0.41
CLN3-232ENST00000568443 HSF4Q9ULV5 492 aa17.59■□□□□ 0.41
CLN3-232ENST00000568443 MGAT4AQ9UM21 535 aa17.59■□□□□ 0.41
CLN3-232ENST00000568443 WSB1Q9Y6I7 421 aa17.59■□□□□ 0.41
CLN3-232ENST00000568443 HSPA12AO43301 675 aa17.58■□□□□ 0.4
CLN3-232ENST00000568443 HLA-DRB1P01911 266 aa17.58■□□□□ 0.4
CLN3-232ENST00000568443 PSMB8P28062 276 aa17.58■□□□□ 0.4
CLN3-232ENST00000568443 CEACAM6P40199 344 aa17.58■□□□□ 0.4
CLN3-232ENST00000568443 HSPA13P48723 471 aa17.58■□□□□ 0.4
CLN3-232ENST00000568443 VEGFCP49767 419 aa17.58■□□□□ 0.4
CLN3-232ENST00000568443 PSMD7P51665 324 aa17.58■□□□□ 0.4
CLN3-232ENST00000568443 CLDN12P56749 244 aa17.58■□□□□ 0.4
CLN3-232ENST00000568443 C5orf64Q2M2E5 130 aa17.58■□□□□ 0.4
CLN3-232ENST00000568443 TMEM65Q6PI78 240 aa17.58■□□□□ 0.4
CLN3-232ENST00000568443 NPBQ8NG41 125 aa17.58■□□□□ 0.4
CLN3-232ENST00000568443 FAM3DQ96BQ1 224 aa17.58■□□□□ 0.4
CLN3-232ENST00000568443 ZBTB25P24278 435 aa17.57■□□□□ 0.4
CLN3-232ENST00000568443 TMEM50BP56557 158 aa17.57■□□□□ 0.4
CLN3-232ENST00000568443 C2orf76Q3KRA6 126 aa17.57■□□□□ 0.4
CLN3-232ENST00000568443 RPL39P5Q59GN2 51 aa17.57■□□□□ 0.4
CLN3-232ENST00000568443 FAM131AQ6UXB0 335 aa17.57■□□□□ 0.4
CLN3-232ENST00000568443 IZUMO2Q6UXV1 221 aa17.57■□□□□ 0.4
CLN3-232ENST00000568443 ARHGAP5-AS1Q96IT6 56 aa17.57■□□□□ 0.4
CLN3-232ENST00000568443 ABHD14BQ96IU4 210 aa17.57■□□□□ 0.4
CLN3-232ENST00000568443 CNBD2Q96M20 576 aa17.57■□□□□ 0.4
CLN3-232ENST00000568443 PARP12Q9H0J9 701 aaKnown RBP17.57■□□□□ 0.4
CLN3-232ENST00000568443 C12orf4Q9NQ89 552 aa17.57■□□□□ 0.4
CLN3-232ENST00000568443 PARP11Q9NR21 331 aa17.57■□□□□ 0.4
CLN3-232ENST00000568443 V9GY05 133 aa17.57■□□□□ 0.4
CLN3-232ENST00000568443 FOXI3A8MTJ6 420 aaPredicted RBP17.56■□□□□ 0.4
CLN3-232ENST00000568443 G3V318 75 aa17.56■□□□□ 0.4
CLN3-232ENST00000568443 ITGB1BP1O14713 200 aa17.56■□□□□ 0.4
CLN3-232ENST00000568443 ATP6V0E1O15342 81 aa17.56■□□□□ 0.4
CLN3-232ENST00000568443 CT45A6P0DMU7 189 aa17.56■□□□□ 0.4
CLN3-232ENST00000568443 CT45A5P0DMU8 189 aa17.56■□□□□ 0.4
CLN3-232ENST00000568443 CT45A7P0DMV0 189 aa17.56■□□□□ 0.4
CLN3-232ENST00000568443 MC5RP33032 325 aa17.56■□□□□ 0.4
CLN3-232ENST00000568443 HLA-DRB3P79483 266 aa17.56■□□□□ 0.4
CLN3-232ENST00000568443 OR56B1Q8NGI3 324 aa17.56■□□□□ 0.4
CLN3-232ENST00000568443 OR5M8Q8NGP6 311 aa17.56■□□□□ 0.4
CLN3-232ENST00000568443 C4orf3Q8WVX3 66 aa17.56■□□□□ 0.4
CLN3-232ENST00000568443 EDARADDQ8WWZ3 215 aa17.56■□□□□ 0.4
CLN3-232ENST00000568443 CMSS1Q9BQ75 279 aaKnown RBP17.56■□□□□ 0.4
CLN3-232ENST00000568443 PECRQ9BY49 303 aa17.56■□□□□ 0.4
CLN3-232ENST00000568443 Q9N2K0 584 aa17.56■□□□□ 0.4
CLN3-232ENST00000568443 OR1A1Q9P1Q5 309 aa17.56■□□□□ 0.4
CLN3-232ENST00000568443 BLOC1S6Q9UL45 172 aa17.56■□□□□ 0.4
CLN3-232ENST00000568443 IGHV7-81A0A0B4J1V7 117 aa17.55■□□□□ 0.4
CLN3-232ENST00000568443 TRAV41A0A0B4J266 112 aa17.55■□□□□ 0.4
CLN3-232ENST00000568443 OR5H14A6NHG9 310 aa17.55■□□□□ 0.4
CLN3-232ENST00000568443 DENRO43583 198 aaKnown RBP17.55■□□□□ 0.4
CLN3-232ENST00000568443 SCTP09683 121 aa17.55■□□□□ 0.4
CLN3-232ENST00000568443 PPIFP30405 207 aaKnown RBP17.55■□□□□ 0.4
CLN3-232ENST00000568443 AGMATQ9BSE5 352 aa17.55■□□□□ 0.4
CLN3-232ENST00000568443 C11orf54Q9H0W9 315 aaPredicted RBP17.55■□□□□ 0.4
CLN3-232ENST00000568443 H7C2Y5 167 aa17.54■□□□□ 0.4
CLN3-232ENST00000568443 NDUFA3O95167 84 aa17.54■□□□□ 0.4
CLN3-232ENST00000568443 GSTP1P09211 210 aaKnown RBP17.54■□□□□ 0.4
CLN3-232ENST00000568443 PLGLAQ15195 96 aa17.54■□□□□ 0.4
CLN3-232ENST00000568443 TBCEQ15813 527 aaPredicted RBP17.54■□□□□ 0.4
CLN3-232ENST00000568443 HES5Q5TA89 166 aa17.54■□□□□ 0.4
CLN3-232ENST00000568443 GLDNQ6ZMI3 551 aaPredicted RBP17.54■□□□□ 0.4
CLN3-232ENST00000568443 ZNF367Q7RTV3 350 aa17.54■□□□□ 0.4
CLN3-232ENST00000568443 KLK15Q9H2R5 256 aa17.54■□□□□ 0.4
CLN3-232ENST00000568443 RAB22AQ9UL26 194 aa17.54■□□□□ 0.4
CLN3-232ENST00000568443 RNF150Q9ULK6 438 aa17.54■□□□□ 0.4
CLN3-232ENST00000568443 PDCD5O14737 125 aa17.53■□□□□ 0.4
CLN3-232ENST00000568443 MRPS15P82914 257 aaKnown RBP17.53■□□□□ 0.4
CLN3-232ENST00000568443 DGCR2P98153 550 aa17.53■□□□□ 0.4
CLN3-232ENST00000568443 OR11H1Q8NG94 326 aa17.53■□□□□ 0.4
CLN3-232ENST00000568443 UBE2E2Q96LR5 201 aa17.53■□□□□ 0.4
CLN3-232ENST00000568443 FBXL15Q9H469 300 aa17.53■□□□□ 0.4
CLN3-232ENST00000568443 ZNF221Q9UK13 617 aa17.53■□□□□ 0.4
CLN3-232ENST00000568443 WASHC3Q9Y3C0 194 aa17.53■□□□□ 0.4
CLN3-232ENST00000568443 TMEM272A0A1B0GTI8 110 aa17.52■□□□□ 0.4
CLN3-232ENST00000568443 H0YJW9 148 aa17.52■□□□□ 0.4
CLN3-232ENST00000568443 RRHO14718 337 aa17.52■□□□□ 0.4
CLN3-232ENST00000568443 LDLRAD4O15165 306 aa17.52■□□□□ 0.4
CLN3-232ENST00000568443 RBBP9O75884 186 aa17.52■□□□□ 0.4
CLN3-232ENST00000568443 IGLV1-40P01703 118 aa17.52■□□□□ 0.4
CLN3-232ENST00000568443 PLAC9Q5JTB6 97 aa17.52■□□□□ 0.4
CLN3-232ENST00000568443 ZNF660Q6AZW8 331 aaPredicted RBP17.52■□□□□ 0.4
CLN3-232ENST00000568443 ZNF491Q8N8L2 437 aa17.52■□□□□ 0.4
CLN3-232ENST00000568443 OR5AN1Q8NGI8 311 aa17.52■□□□□ 0.4
CLN3-232ENST00000568443 MYOZ3Q8TDC0 251 aa17.52■□□□□ 0.4
CLN3-232ENST00000568443 PTX4Q96A99 478 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms