RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 MAP2K4P45985 399 aa17.6■□□□□ 0.41
CLN3-215ENST00000565236 OR8U1Q8NH10 309 aa17.6■□□□□ 0.41
CLN3-215ENST00000565236 SLC23A1Q9UHI7 598 aa17.6■□□□□ 0.41
CLN3-215ENST00000565236 AK3Q9UIJ7 227 aa17.6■□□□□ 0.41
CLN3-215ENST00000565236 TRBV6-6A0A0A6YYG2 114 aa17.59■□□□□ 0.41
CLN3-215ENST00000565236 FABP5Q01469 135 aa17.59■□□□□ 0.41
CLN3-215ENST00000565236 DEFB136Q30KP8 78 aa17.59■□□□□ 0.41
CLN3-215ENST00000565236 LIN54Q6MZP7 749 aa17.59■□□□□ 0.41
CLN3-215ENST00000565236 FAM71F2Q6NXP2 309 aa17.59■□□□□ 0.41
CLN3-215ENST00000565236 HDHD3Q9BSH5 251 aaPredicted RBP17.59■□□□□ 0.41
CLN3-215ENST00000565236 OR51J1Q9H342 316 aa17.59■□□□□ 0.41
CLN3-215ENST00000565236 GHITMQ9H3K2 345 aa17.59■□□□□ 0.41
CLN3-215ENST00000565236 ACOT13Q9NPJ3 140 aa17.59■□□□□ 0.41
CLN3-215ENST00000565236 KIAA1456Q9P272 454 aa17.59■□□□□ 0.41
CLN3-215ENST00000565236 ZMAT5Q9UDW3 170 aaKnown RBP17.59■□□□□ 0.41
CLN3-215ENST00000565236 HSF4Q9ULV5 492 aa17.59■□□□□ 0.41
CLN3-215ENST00000565236 MGAT4AQ9UM21 535 aa17.59■□□□□ 0.41
CLN3-215ENST00000565236 WSB1Q9Y6I7 421 aa17.59■□□□□ 0.41
CLN3-215ENST00000565236 HSPA12AO43301 675 aa17.58■□□□□ 0.4
CLN3-215ENST00000565236 HLA-DRB1P01911 266 aa17.58■□□□□ 0.4
CLN3-215ENST00000565236 PSMB8P28062 276 aa17.58■□□□□ 0.4
CLN3-215ENST00000565236 CEACAM6P40199 344 aa17.58■□□□□ 0.4
CLN3-215ENST00000565236 HSPA13P48723 471 aa17.58■□□□□ 0.4
CLN3-215ENST00000565236 VEGFCP49767 419 aa17.58■□□□□ 0.4
CLN3-215ENST00000565236 PSMD7P51665 324 aa17.58■□□□□ 0.4
CLN3-215ENST00000565236 CLDN12P56749 244 aa17.58■□□□□ 0.4
CLN3-215ENST00000565236 C5orf64Q2M2E5 130 aa17.58■□□□□ 0.4
CLN3-215ENST00000565236 TMEM65Q6PI78 240 aa17.58■□□□□ 0.4
CLN3-215ENST00000565236 NPBQ8NG41 125 aa17.58■□□□□ 0.4
CLN3-215ENST00000565236 FAM3DQ96BQ1 224 aa17.58■□□□□ 0.4
CLN3-215ENST00000565236 ZBTB25P24278 435 aa17.57■□□□□ 0.4
CLN3-215ENST00000565236 TMEM50BP56557 158 aa17.57■□□□□ 0.4
CLN3-215ENST00000565236 C2orf76Q3KRA6 126 aa17.57■□□□□ 0.4
CLN3-215ENST00000565236 RPL39P5Q59GN2 51 aa17.57■□□□□ 0.4
CLN3-215ENST00000565236 FAM131AQ6UXB0 335 aa17.57■□□□□ 0.4
CLN3-215ENST00000565236 IZUMO2Q6UXV1 221 aa17.57■□□□□ 0.4
CLN3-215ENST00000565236 ARHGAP5-AS1Q96IT6 56 aa17.57■□□□□ 0.4
CLN3-215ENST00000565236 ABHD14BQ96IU4 210 aa17.57■□□□□ 0.4
CLN3-215ENST00000565236 CNBD2Q96M20 576 aa17.57■□□□□ 0.4
CLN3-215ENST00000565236 PARP12Q9H0J9 701 aaKnown RBP17.57■□□□□ 0.4
CLN3-215ENST00000565236 C12orf4Q9NQ89 552 aa17.57■□□□□ 0.4
CLN3-215ENST00000565236 PARP11Q9NR21 331 aa17.57■□□□□ 0.4
CLN3-215ENST00000565236 V9GY05 133 aa17.57■□□□□ 0.4
CLN3-215ENST00000565236 FOXI3A8MTJ6 420 aaPredicted RBP17.56■□□□□ 0.4
CLN3-215ENST00000565236 G3V318 75 aa17.56■□□□□ 0.4
CLN3-215ENST00000565236 ITGB1BP1O14713 200 aa17.56■□□□□ 0.4
CLN3-215ENST00000565236 ATP6V0E1O15342 81 aa17.56■□□□□ 0.4
CLN3-215ENST00000565236 CT45A6P0DMU7 189 aa17.56■□□□□ 0.4
CLN3-215ENST00000565236 CT45A5P0DMU8 189 aa17.56■□□□□ 0.4
CLN3-215ENST00000565236 CT45A7P0DMV0 189 aa17.56■□□□□ 0.4
CLN3-215ENST00000565236 MC5RP33032 325 aa17.56■□□□□ 0.4
CLN3-215ENST00000565236 HLA-DRB3P79483 266 aa17.56■□□□□ 0.4
CLN3-215ENST00000565236 OR56B1Q8NGI3 324 aa17.56■□□□□ 0.4
CLN3-215ENST00000565236 OR5M8Q8NGP6 311 aa17.56■□□□□ 0.4
CLN3-215ENST00000565236 C4orf3Q8WVX3 66 aa17.56■□□□□ 0.4
CLN3-215ENST00000565236 EDARADDQ8WWZ3 215 aa17.56■□□□□ 0.4
CLN3-215ENST00000565236 CMSS1Q9BQ75 279 aaKnown RBP17.56■□□□□ 0.4
CLN3-215ENST00000565236 PECRQ9BY49 303 aa17.56■□□□□ 0.4
CLN3-215ENST00000565236 Q9N2K0 584 aa17.56■□□□□ 0.4
CLN3-215ENST00000565236 OR1A1Q9P1Q5 309 aa17.56■□□□□ 0.4
CLN3-215ENST00000565236 BLOC1S6Q9UL45 172 aa17.56■□□□□ 0.4
CLN3-215ENST00000565236 IGHV7-81A0A0B4J1V7 117 aa17.55■□□□□ 0.4
CLN3-215ENST00000565236 TRAV41A0A0B4J266 112 aa17.55■□□□□ 0.4
CLN3-215ENST00000565236 OR5H14A6NHG9 310 aa17.55■□□□□ 0.4
CLN3-215ENST00000565236 DENRO43583 198 aaKnown RBP17.55■□□□□ 0.4
CLN3-215ENST00000565236 SCTP09683 121 aa17.55■□□□□ 0.4
CLN3-215ENST00000565236 PPIFP30405 207 aaKnown RBP17.55■□□□□ 0.4
CLN3-215ENST00000565236 AGMATQ9BSE5 352 aa17.55■□□□□ 0.4
CLN3-215ENST00000565236 C11orf54Q9H0W9 315 aaPredicted RBP17.55■□□□□ 0.4
CLN3-215ENST00000565236 H7C2Y5 167 aa17.54■□□□□ 0.4
CLN3-215ENST00000565236 NDUFA3O95167 84 aa17.54■□□□□ 0.4
CLN3-215ENST00000565236 GSTP1P09211 210 aaKnown RBP17.54■□□□□ 0.4
CLN3-215ENST00000565236 PLGLAQ15195 96 aa17.54■□□□□ 0.4
CLN3-215ENST00000565236 TBCEQ15813 527 aaPredicted RBP17.54■□□□□ 0.4
CLN3-215ENST00000565236 HES5Q5TA89 166 aa17.54■□□□□ 0.4
CLN3-215ENST00000565236 GLDNQ6ZMI3 551 aaPredicted RBP17.54■□□□□ 0.4
CLN3-215ENST00000565236 ZNF367Q7RTV3 350 aa17.54■□□□□ 0.4
CLN3-215ENST00000565236 KLK15Q9H2R5 256 aa17.54■□□□□ 0.4
CLN3-215ENST00000565236 RAB22AQ9UL26 194 aa17.54■□□□□ 0.4
CLN3-215ENST00000565236 RNF150Q9ULK6 438 aa17.54■□□□□ 0.4
CLN3-215ENST00000565236 PDCD5O14737 125 aa17.53■□□□□ 0.4
CLN3-215ENST00000565236 MRPS15P82914 257 aaKnown RBP17.53■□□□□ 0.4
CLN3-215ENST00000565236 DGCR2P98153 550 aa17.53■□□□□ 0.4
CLN3-215ENST00000565236 OR11H1Q8NG94 326 aa17.53■□□□□ 0.4
CLN3-215ENST00000565236 UBE2E2Q96LR5 201 aa17.53■□□□□ 0.4
CLN3-215ENST00000565236 FBXL15Q9H469 300 aa17.53■□□□□ 0.4
CLN3-215ENST00000565236 ZNF221Q9UK13 617 aa17.53■□□□□ 0.4
CLN3-215ENST00000565236 WASHC3Q9Y3C0 194 aa17.53■□□□□ 0.4
CLN3-215ENST00000565236 TMEM272A0A1B0GTI8 110 aa17.52■□□□□ 0.4
CLN3-215ENST00000565236 H0YJW9 148 aa17.52■□□□□ 0.4
CLN3-215ENST00000565236 RRHO14718 337 aa17.52■□□□□ 0.4
CLN3-215ENST00000565236 LDLRAD4O15165 306 aa17.52■□□□□ 0.4
CLN3-215ENST00000565236 RBBP9O75884 186 aa17.52■□□□□ 0.4
CLN3-215ENST00000565236 IGLV1-40P01703 118 aa17.52■□□□□ 0.4
CLN3-215ENST00000565236 PLAC9Q5JTB6 97 aa17.52■□□□□ 0.4
CLN3-215ENST00000565236 ZNF660Q6AZW8 331 aaPredicted RBP17.52■□□□□ 0.4
CLN3-215ENST00000565236 ZNF491Q8N8L2 437 aa17.52■□□□□ 0.4
CLN3-215ENST00000565236 OR5AN1Q8NGI8 311 aa17.52■□□□□ 0.4
CLN3-215ENST00000565236 MYOZ3Q8TDC0 251 aa17.52■□□□□ 0.4
CLN3-215ENST00000565236 PTX4Q96A99 478 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms