RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 MRGPRGQ86SM5 289 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 PILRBQ9UKJ0 227 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 TRAPPC2LQ9UL33 140 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 RNF150Q9ULK6 438 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 LAMP3Q9UQV4 416 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 ANKRD30BLA7E2S9 258 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 OPN1MWP04001 364 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 OPN1MW2P0DN77 364 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 OPN1MW3P0DN78 364 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 DDTP30046 118 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 TMEM41BQ5BJD5 291 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 NCR3LG1Q68D85 454 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 OR10A7Q8NGE5 316 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 POM121L2Q96KW2 1035 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 ELOVL1Q9BW60 279 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 TMEM242Q9NWH2 141 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 SIT1Q9Y3P8 196 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 GTF3C1Q12789 2109 aa11.18□□□□□ -0.62
CLN3-210ENST00000563874 TRBV24-1A0A075B6N3 115 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 WNT5AP41221 380 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 COL10A1Q03692 680 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 SLC38A11Q08AI6 406 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 OR5T1Q8NG75 326 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 TAF15Q92804 592 aaKnown RBP eCLIP11.17□□□□□ -0.62
CLN3-210ENST00000563874 PSMG3Q9BT73 122 aaPredicted RBP11.17□□□□□ -0.62
CLN3-210ENST00000563874 A0A087X0M5 115 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 A0A1B0GX30 115 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 SELEP16581 610 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.17□□□□□ -0.62
CLN3-210ENST00000563874 ZNF573Q86YE8 665 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 MAFAQ8NHW3 353 aaPredicted RBP11.17□□□□□ -0.62
CLN3-210ENST00000563874 TMEM45BQ96B21 275 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 KRASP01116 189 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 SLC25A6P12236 298 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 GZMHP20718 246 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 CEACAM6P40199 344 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 GNG3P63215 75 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 SERF2P84101 59 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 HOXA4Q00056 320 aaPredicted RBP11.17□□□□□ -0.62
CLN3-210ENST00000563874 MEF2BQ02080 365 aaPredicted RBP11.17□□□□□ -0.62
CLN3-210ENST00000563874 FGFRL1Q8N441 504 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 LSM10Q969L4 123 aaKnown RBP11.17□□□□□ -0.62
CLN3-210ENST00000563874 GPR87Q9BY21 358 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 TMEM9BQ9NQ34 198 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 PRSS50Q9UI38 385 aa11.17□□□□□ -0.62
CLN3-210ENST00000563874 ZDBF2Q9HCK1 2354 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 NTN3O00634 580 aaPredicted RBP11.16□□□□□ -0.62
CLN3-210ENST00000563874 RAMP3O60896 148 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 LHX2P50458 406 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 P2RY6Q15077 328 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 ACSM6Q6P461 480 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 P2RX4Q99571 388 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 C12orf49Q9H741 205 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 CDH20Q9HBT6 801 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 PLA2G3Q9NZ20 509 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 PITPNC1Q9UKF7 332 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 A0A1W2PPQ1 181 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 TSTD3H0UI37 97 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 IFNA1P01562 189 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 BMP5P22003 454 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 MAGEA5P43359 124 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 PKIAP61925 76 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 PMP22Q01453 160 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 PLP2Q04941 152 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 TMEM241Q24JQ0 296 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 PMS2CLQ68D20 193 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 DRAM1Q8N682 238 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 APH1AQ96BI3 265 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 THOC3Q96J01 351 aaKnown RBP11.16□□□□□ -0.62
CLN3-210ENST00000563874 NAT8Q9UHE5 227 aa11.16□□□□□ -0.62
CLN3-210ENST00000563874 IGKV3D-15A0A087WSY6 115 aa11.15□□□□□ -0.62
CLN3-210ENST00000563874 DLL1O00548 723 aa11.15□□□□□ -0.62
CLN3-210ENST00000563874 OR2H2O95918 312 aa11.15□□□□□ -0.62
CLN3-210ENST00000563874 CEBPDP49716 269 aaPredicted RBP11.15□□□□□ -0.62
CLN3-210ENST00000563874 PRSS8Q16651 343 aa11.15□□□□□ -0.62
CLN3-210ENST00000563874 BSXQ3C1V8 233 aa11.15□□□□□ -0.62
CLN3-210ENST00000563874 NRN1LQ496H8 165 aa11.15□□□□□ -0.62
CLN3-210ENST00000563874 SPINK9Q5DT21 86 aa11.15□□□□□ -0.62
CLN3-210ENST00000563874 TIPARPQ7Z3E1 657 aaKnown RBP11.15□□□□□ -0.62
CLN3-210ENST00000563874 PCGF1Q9BSM1 259 aa11.15□□□□□ -0.62
CLN3-210ENST00000563874 CLN8Q9UBY8 286 aa11.15□□□□□ -0.62
CLN3-210ENST00000563874 TRBV6-6A0A0A6YYG2 114 aa11.15□□□□□ -0.62
CLN3-210ENST00000563874 GALR2O43603 387 aaPredicted RBP11.15□□□□□ -0.62
CLN3-210ENST00000563874 AMBPP02760 352 aa11.15□□□□□ -0.62
CLN3-210ENST00000563874 G6PCP35575 357 aa11.15□□□□□ -0.62
CLN3-210ENST00000563874 CLDN18P56856 261 aa11.15□□□□□ -0.62
CLN3-210ENST00000563874 RPL23P62829 140 aaKnown RBP11.15□□□□□ -0.62
CLN3-210ENST00000563874 ZNF816Q0VGE8 651 aaPredicted RBP11.15□□□□□ -0.62
CLN3-210ENST00000563874 Q6P435 159 aa11.15□□□□□ -0.62
CLN3-210ENST00000563874 NUFIP2Q7Z417 695 aaKnown RBP11.15□□□□□ -0.62
CLN3-210ENST00000563874 ZNF808Q8N4W9 903 aaPredicted RBP11.15□□□□□ -0.62
CLN3-210ENST00000563874 OR4F5Q8NH21 305 aa11.15□□□□□ -0.62
CLN3-210ENST00000563874 OR4F4Q96R69 305 aa11.15□□□□□ -0.62
CLN3-210ENST00000563874 LIN7CQ9NUP9 197 aaKnown RBP11.15□□□□□ -0.62
CLN3-210ENST00000563874 KNTC1P50748 2209 aa11.15□□□□□ -0.62
CLN3-210ENST00000563874 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.15□□□□□ -0.63
CLN3-210ENST00000563874 SS18L1O75177 396 aaPredicted RBP11.15□□□□□ -0.63
CLN3-210ENST00000563874 MT-CO3P00414 261 aa11.15□□□□□ -0.63
CLN3-210ENST00000563874 PFN1P07737 140 aaKnown RBP11.15□□□□□ -0.63
CLN3-210ENST00000563874 GALR1P47211 349 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms