RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 FBXO7Q9Y3I1 522 aa14.78□□□□□ -0.04
VPS35-202ENST00000561713 DNAH1Q9P2D7 4330 aa14.77□□□□□ -0.04
VPS35-202ENST00000561713 SLC22A1O15245 554 aa14.77□□□□□ -0.05
VPS35-202ENST00000561713 RGS11O94810 467 aa14.77□□□□□ -0.05
VPS35-202ENST00000561713 HLA-DRB1P01911 266 aa14.77□□□□□ -0.05
VPS35-202ENST00000561713 SNRPBP14678 240 aaKnown RBP14.77□□□□□ -0.05
VPS35-202ENST00000561713 GNB1P62873 340 aa14.77□□□□□ -0.05
VPS35-202ENST00000561713 QRFPP83859 136 aa14.77□□□□□ -0.05
VPS35-202ENST00000561713 FHL3Q13643 280 aa14.77□□□□□ -0.05
VPS35-202ENST00000561713 C5orf64Q2M2E5 130 aa14.77□□□□□ -0.05
VPS35-202ENST00000561713 C9orf66Q5T8R8 295 aa14.77□□□□□ -0.05
VPS35-202ENST00000561713 OR11H1Q8NG94 326 aa14.77□□□□□ -0.05
VPS35-202ENST00000561713 MYOZ3Q8TDC0 251 aa14.77□□□□□ -0.05
VPS35-202ENST00000561713 PHYHIPQ92561 330 aa14.77□□□□□ -0.05
VPS35-202ENST00000561713 ABHD14BQ96IU4 210 aa14.77□□□□□ -0.05
VPS35-202ENST00000561713 TM2D1Q9BX74 207 aa14.77□□□□□ -0.05
VPS35-202ENST00000561713 OR51J1Q9H342 316 aa14.77□□□□□ -0.05
VPS35-202ENST00000561713 ABRACLQ9P1F3 81 aa14.77□□□□□ -0.05
VPS35-202ENST00000561713 OR1A1Q9P1Q5 309 aa14.77□□□□□ -0.05
VPS35-202ENST00000561713 A3GALT2U3KPV4 340 aa14.77□□□□□ -0.05
VPS35-202ENST00000561713 TMEM14DPA8MWL7 114 aa14.76□□□□□ -0.05
VPS35-202ENST00000561713 SOCS1O15524 211 aa14.76□□□□□ -0.05
VPS35-202ENST00000561713 NAPSAO96009 420 aa14.76□□□□□ -0.05
VPS35-202ENST00000561713 UCHL1P09936 223 aa14.76□□□□□ -0.05
VPS35-202ENST00000561713 HSMCR30P0CW71 290 aa14.76□□□□□ -0.05
VPS35-202ENST00000561713 PPIFP30405 207 aaKnown RBP14.76□□□□□ -0.05
VPS35-202ENST00000561713 MS4A15Q8N5U1 240 aa14.76□□□□□ -0.05
VPS35-202ENST00000561713 KCNG3Q8TAE7 436 aa14.76□□□□□ -0.05
VPS35-202ENST00000561713 MUC7Q8TAX7 377 aa14.76□□□□□ -0.05
VPS35-202ENST00000561713 UFD1Q92890 307 aa14.76□□□□□ -0.05
VPS35-202ENST00000561713 ALX4Q9H161 411 aaPredicted RBP14.76□□□□□ -0.05
VPS35-202ENST00000561713 FBXL15Q9H469 300 aa14.76□□□□□ -0.05
VPS35-202ENST00000561713 AK3Q9UIJ7 227 aa14.76□□□□□ -0.05
VPS35-202ENST00000561713 ZNF580Q9UK33 172 aa14.76□□□□□ -0.05
VPS35-202ENST00000561713 CSMD3Q7Z407 3707 aa14.75□□□□□ -0.05
VPS35-202ENST00000561713 TRAV41A0A0B4J266 112 aa14.75□□□□□ -0.05
VPS35-202ENST00000561713 BPNT1O95861 308 aa14.75□□□□□ -0.05
VPS35-202ENST00000561713 OR5H8P0DN80 308 aa14.75□□□□□ -0.05
VPS35-202ENST00000561713 SRMP19623 302 aa14.75□□□□□ -0.05
VPS35-202ENST00000561713 CLDN12P56749 244 aa14.75□□□□□ -0.05
VPS35-202ENST00000561713 KIAA0141Q14154 515 aaPredicted RBP14.75□□□□□ -0.05
VPS35-202ENST00000561713 IRF3Q14653 427 aa14.75□□□□□ -0.05
VPS35-202ENST00000561713 ZNF880Q6PDB4 577 aa14.75□□□□□ -0.05
VPS35-202ENST00000561713 OR6M1Q8NGM8 313 aa14.75□□□□□ -0.05
VPS35-202ENST00000561713 NRG4Q8WWG1 115 aa14.75□□□□□ -0.05
VPS35-202ENST00000561713 LPAR5Q9H1C0 372 aa14.75□□□□□ -0.05
VPS35-202ENST00000561713 PLGRKTQ9HBL7 147 aa14.75□□□□□ -0.05
VPS35-202ENST00000561713 GAR1Q9NY12 217 aaKnown RBP14.75□□□□□ -0.05
VPS35-202ENST00000561713 KIAA1456Q9P272 454 aa14.75□□□□□ -0.05
VPS35-202ENST00000561713 STEAP1Q9UHE8 339 aa14.75□□□□□ -0.05
VPS35-202ENST00000561713 SLC23A1Q9UHI7 598 aa14.75□□□□□ -0.05
VPS35-202ENST00000561713 HLA-DRB3P79483 266 aa14.74□□□□□ -0.05
VPS35-202ENST00000561713 ZNF260Q3ZCT1 412 aa14.74□□□□□ -0.05
VPS35-202ENST00000561713 RNLSQ5VYX0 342 aa14.74□□□□□ -0.05
VPS35-202ENST00000561713 TMEM65Q6PI78 240 aa14.74□□□□□ -0.05
VPS35-202ENST00000561713 TMEM91Q6ZNR0 172 aa14.74□□□□□ -0.05
VPS35-202ENST00000561713 MOB1BQ7L9L4 216 aa14.74□□□□□ -0.05
VPS35-202ENST00000561713 ZNF491Q8N8L2 437 aa14.74□□□□□ -0.05
VPS35-202ENST00000561713 ABHD5Q8WTS1 349 aa14.74□□□□□ -0.05
VPS35-202ENST00000561713 PLEKHJ1Q9NW61 149 aa14.74□□□□□ -0.05
VPS35-202ENST00000561713 GAB2Q9UQC2 676 aa14.74□□□□□ -0.05
VPS35-202ENST00000561713 AK6Q9Y3D8 172 aaKnown RBP14.74□□□□□ -0.05
VPS35-202ENST00000561713 STARD9Q9P2P6 4700 aa14.73□□□□□ -0.05
VPS35-202ENST00000561713 A0A1W2PN81 502 aa14.73□□□□□ -0.05
VPS35-202ENST00000561713 SOX15O60248 233 aa14.73□□□□□ -0.05
VPS35-202ENST00000561713 NDUFA3O95167 84 aa14.73□□□□□ -0.05
VPS35-202ENST00000561713 IGLV1-40P01703 118 aa14.73□□□□□ -0.05
VPS35-202ENST00000561713 CT45A6P0DMU7 189 aa14.73□□□□□ -0.05
VPS35-202ENST00000561713 CT45A5P0DMU8 189 aa14.73□□□□□ -0.05
VPS35-202ENST00000561713 CT45A7P0DMV0 189 aa14.73□□□□□ -0.05
VPS35-202ENST00000561713 CHRNA7P36544 502 aa14.73□□□□□ -0.05
VPS35-202ENST00000561713 PLGLAQ15195 96 aa14.73□□□□□ -0.05
VPS35-202ENST00000561713 FAM103A1Q9BTL3 118 aaKnown RBP14.73□□□□□ -0.05
VPS35-202ENST00000561713 SCN3BQ9NY72 215 aa14.73□□□□□ -0.05
VPS35-202ENST00000561713 ZNF256Q9Y2P7 627 aaPredicted RBP14.73□□□□□ -0.05
VPS35-202ENST00000561713 H0YJW9 148 aa14.72□□□□□ -0.05
VPS35-202ENST00000561713 I3L521 148 aa14.72□□□□□ -0.05
VPS35-202ENST00000561713 SLC17A2O00624 439 aa14.72□□□□□ -0.05
VPS35-202ENST00000561713 MAP2K4P45985 399 aa14.72□□□□□ -0.05
VPS35-202ENST00000561713 LINC00205P59089 165 aa14.72□□□□□ -0.05
VPS35-202ENST00000561713 PLA2G7Q13093 441 aa14.72□□□□□ -0.05
VPS35-202ENST00000561713 LY6G6FQ5SQ64 297 aa14.72□□□□□ -0.05
VPS35-202ENST00000561713 LIN54Q6MZP7 749 aa14.72□□□□□ -0.05
VPS35-202ENST00000561713 DRAXINQ8NBI3 349 aaPredicted RBP14.72□□□□□ -0.05
VPS35-202ENST00000561713 NPBQ8NG41 125 aa14.72□□□□□ -0.05
VPS35-202ENST00000561713 OR1N2Q8NGR9 330 aa14.72□□□□□ -0.05
VPS35-202ENST00000561713 PIPOXQ9P0Z9 390 aa14.72□□□□□ -0.05
VPS35-202ENST00000561713 RNF150Q9ULK6 438 aa14.72□□□□□ -0.05
VPS35-202ENST00000561713 VSIG4Q9Y279 399 aa14.72□□□□□ -0.05
VPS35-202ENST00000561713 FOXI3A8MTJ6 420 aaPredicted RBP14.71□□□□□ -0.05
VPS35-202ENST00000561713 H7C2Y5 167 aa14.71□□□□□ -0.05
VPS35-202ENST00000561713 FCN1O00602 326 aa14.71□□□□□ -0.05
VPS35-202ENST00000561713 RRHO14718 337 aa14.71□□□□□ -0.05
VPS35-202ENST00000561713 LY86O95711 162 aa14.71□□□□□ -0.05
VPS35-202ENST00000561713 SCTP09683 121 aa14.71□□□□□ -0.05
VPS35-202ENST00000561713 ARSBP15848 533 aa14.71□□□□□ -0.05
VPS35-202ENST00000561713 VEGFCP49767 419 aa14.71□□□□□ -0.05
VPS35-202ENST00000561713 SLURP1P55000 103 aa14.71□□□□□ -0.05
VPS35-202ENST00000561713 ZNF616Q08AN1 781 aa14.71□□□□□ -0.05
VPS35-202ENST00000561713 RAB11BQ15907 218 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms