RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 RBMXL1Q96E39 390 aaKnown RBP17.52■□□□□ 0.4
SNX1-210ENST00000560260 CHIAQ9BZP6 476 aa17.52■□□□□ 0.4
SNX1-210ENST00000560260 GABARAPH6UMI1 98 aa17.51■□□□□ 0.39
SNX1-210ENST00000560260 CLDN34H7C241 214 aa17.51■□□□□ 0.39
SNX1-210ENST00000560260 TIMM23O14925 209 aa17.51■□□□□ 0.39
SNX1-210ENST00000560260 CTDSPLO15194 276 aa17.51■□□□□ 0.39
SNX1-210ENST00000560260 TUSC2O75896 110 aa17.51■□□□□ 0.39
SNX1-210ENST00000560260 CTXN2P0C2S0 81 aa17.51■□□□□ 0.39
SNX1-210ENST00000560260 IL3RAP26951 378 aa17.51■□□□□ 0.39
SNX1-210ENST00000560260 RPL39P5Q59GN2 51 aa17.51■□□□□ 0.39
SNX1-210ENST00000560260 FAM131AQ6UXB0 335 aa17.51■□□□□ 0.39
SNX1-210ENST00000560260 ZNF833PQ6ZTB9 187 aa17.51■□□□□ 0.39
SNX1-210ENST00000560260 TMEM86BQ8N661 226 aa17.51■□□□□ 0.39
SNX1-210ENST00000560260 MTFP1Q9UDX5 166 aa17.51■□□□□ 0.39
SNX1-210ENST00000560260 RNF150Q9ULK6 438 aa17.51■□□□□ 0.39
SNX1-210ENST00000560260 IGKV1D-13A0A0B4J2D9 117 aa17.5■□□□□ 0.39
SNX1-210ENST00000560260 IGHV1-3A0A0C4DH29 117 aa17.5■□□□□ 0.39
SNX1-210ENST00000560260 PROP1O75360 226 aa17.5■□□□□ 0.39
SNX1-210ENST00000560260 PMP2P02689 132 aa17.5■□□□□ 0.39
SNX1-210ENST00000560260 IGKV1-13P0DP09 117 aa17.5■□□□□ 0.39
SNX1-210ENST00000560260 CD24P25063 80 aa17.5■□□□□ 0.39
SNX1-210ENST00000560260 HLA-DMAP28067 261 aa17.5■□□□□ 0.39
SNX1-210ENST00000560260 RAB7AP51149 207 aa17.5■□□□□ 0.39
SNX1-210ENST00000560260 DYNLT3P51808 116 aa17.5■□□□□ 0.39
SNX1-210ENST00000560260 MRPS10P82664 201 aaKnown RBP17.5■□□□□ 0.39
SNX1-210ENST00000560260 CDK10Q15131 360 aa17.5■□□□□ 0.39
SNX1-210ENST00000560260 LY6EQ16553 131 aa17.5■□□□□ 0.39
SNX1-210ENST00000560260 C15orf40Q8WUR7 153 aa17.5■□□□□ 0.39
SNX1-210ENST00000560260 JMJD8Q96S16 334 aa17.5■□□□□ 0.39
SNX1-210ENST00000560260 NECAP2Q9NVZ3 263 aa17.5■□□□□ 0.39
SNX1-210ENST00000560260 POMT1Q9Y6A1 747 aa17.5■□□□□ 0.39
SNX1-210ENST00000560260 J3QRK9 145 aa17.49■□□□□ 0.39
SNX1-210ENST00000560260 LANCL1O43813 399 aa17.49■□□□□ 0.39
SNX1-210ENST00000560260 RNASE1P07998 156 aaKnown RBP17.49■□□□□ 0.39
SNX1-210ENST00000560260 OR8U9P0C7N5 309 aa17.49■□□□□ 0.39
SNX1-210ENST00000560260 OR5H8P0DN80 308 aa17.49■□□□□ 0.39
SNX1-210ENST00000560260 HRH1P35367 487 aa17.49■□□□□ 0.39
SNX1-210ENST00000560260 RFX2P48378 723 aa17.49■□□□□ 0.39
SNX1-210ENST00000560260 CCBE1Q6UXH8 406 aaPredicted RBP17.49■□□□□ 0.39
SNX1-210ENST00000560260 OR8H3Q8N146 312 aa17.49■□□□□ 0.39
SNX1-210ENST00000560260 DRAM1Q8N682 238 aa17.49■□□□□ 0.39
SNX1-210ENST00000560260 OR8U1Q8NH10 309 aa17.49■□□□□ 0.39
SNX1-210ENST00000560260 OR56B4Q8NH76 319 aa17.49■□□□□ 0.39
SNX1-210ENST00000560260 FCAMRQ8WWV6 532 aa17.49■□□□□ 0.39
SNX1-210ENST00000560260 MRPL20Q9BYC9 149 aaKnown RBP17.49■□□□□ 0.39
SNX1-210ENST00000560260 DPAGT1Q9H3H5 408 aa17.49■□□□□ 0.39
SNX1-210ENST00000560260 RABL2AQ9UBK7 228 aaPredicted RBP17.49■□□□□ 0.39
SNX1-210ENST00000560260 VPREB3Q9UKI3 123 aa17.49■□□□□ 0.39
SNX1-210ENST00000560260 RABL2BQ9UNT1 228 aa17.49■□□□□ 0.39
SNX1-210ENST00000560260 RBMX2Q9Y388 322 aaKnown RBP17.49■□□□□ 0.39
SNX1-210ENST00000560260 IGHV3-72A0A0B4J1Y9 119 aa17.48■□□□□ 0.39
SNX1-210ENST00000560260 GAPDHP04406 335 aaKnown RBP17.48■□□□□ 0.39
SNX1-210ENST00000560260 AADACP22760 399 aa17.48■□□□□ 0.39
SNX1-210ENST00000560260 ETV6P41212 452 aa17.48■□□□□ 0.39
SNX1-210ENST00000560260 CCDC144NLQ6NUI1 221 aa17.48■□□□□ 0.39
SNX1-210ENST00000560260 OVCH2Q7RTZ1 564 aa17.48■□□□□ 0.39
SNX1-210ENST00000560260 TGIF2LXQ8IUE1 241 aa17.48■□□□□ 0.39
SNX1-210ENST00000560260 OR5H2Q8NGV7 314 aa17.48■□□□□ 0.39
SNX1-210ENST00000560260 OR5R1Q8NH85 324 aa17.48■□□□□ 0.39
SNX1-210ENST00000560260 OR2D2Q9H210 308 aa17.48■□□□□ 0.39
SNX1-210ENST00000560260 EHFQ9NZC4 300 aa17.48■□□□□ 0.39
SNX1-210ENST00000560260 PIPOXQ9P0Z9 390 aa17.48■□□□□ 0.39
SNX1-210ENST00000560260 TCF19Q9Y242 345 aa17.48■□□□□ 0.39
SNX1-210ENST00000560260 OR2W1Q9Y3N9 320 aa17.48■□□□□ 0.39
SNX1-210ENST00000560260 FBN1P35555 2871 aaKnown RBP17.48■□□□□ 0.39
SNX1-210ENST00000560260 A6NDX4 124 aa17.47■□□□□ 0.39
SNX1-210ENST00000560260 FAM90A9PA6NNJ1 464 aa17.47■□□□□ 0.39
SNX1-210ENST00000560260 ZNF736B4DX44 427 aaPredicted RBP17.47■□□□□ 0.39
SNX1-210ENST00000560260 GSTZ1O43708 216 aaPredicted RBP17.47■□□□□ 0.39
SNX1-210ENST00000560260 RBBP9O75884 186 aa17.47■□□□□ 0.39
SNX1-210ENST00000560260 FCGR2CP31995 323 aa17.47■□□□□ 0.39
SNX1-210ENST00000560260 TAS2R46P59540 309 aa17.47■□□□□ 0.39
SNX1-210ENST00000560260 DYRK1AQ13627 763 aa17.47■□□□□ 0.39
SNX1-210ENST00000560260 HABP2Q14520 560 aaPredicted RBP17.47■□□□□ 0.39
SNX1-210ENST00000560260 ZNF660Q6AZW8 331 aaPredicted RBP17.47■□□□□ 0.39
SNX1-210ENST00000560260 TAF15Q92804 592 aaKnown RBP eCLIP17.47■□□□□ 0.39
SNX1-210ENST00000560260 NABP2Q9BQ15 211 aa17.47■□□□□ 0.39
SNX1-210ENST00000560260 ABCB10Q9NRK6 738 aa17.47■□□□□ 0.39
SNX1-210ENST00000560260 M0QYG6 137 aa17.47■□□□□ 0.39
SNX1-210ENST00000560260 RAB29O14966 203 aa17.47■□□□□ 0.39
SNX1-210ENST00000560260 CHST1O43916 411 aa17.47■□□□□ 0.39
SNX1-210ENST00000560260 GPR137BO60478 399 aa17.47■□□□□ 0.39
SNX1-210ENST00000560260 ACTBP60709 375 aa17.47■□□□□ 0.39
SNX1-210ENST00000560260 ACTG1P63261 375 aa17.47■□□□□ 0.39
SNX1-210ENST00000560260 KRTAP24-1Q3LI83 254 aa17.47■□□□□ 0.39
SNX1-210ENST00000560260 FAM71F2Q6NXP2 309 aa17.47■□□□□ 0.39
SNX1-210ENST00000560260 MOB3BQ86TA1 216 aa17.47■□□□□ 0.39
SNX1-210ENST00000560260 TMEM219Q86XT9 240 aa17.47■□□□□ 0.39
SNX1-210ENST00000560260 PTTG2Q9NZH5 202 aa17.47■□□□□ 0.39
SNX1-210ENST00000560260 BTBD17A6NE02 478 aa17.46■□□□□ 0.38
SNX1-210ENST00000560260 TXNL1O43396 289 aa17.46■□□□□ 0.38
SNX1-210ENST00000560260 CD3DP04234 171 aa17.46■□□□□ 0.38
SNX1-210ENST00000560260 SNRNP70P08621 437 aaKnown RBP17.46■□□□□ 0.38
SNX1-210ENST00000560260 GPR12P47775 334 aa17.46■□□□□ 0.38
SNX1-210ENST00000560260 LINC00205P59089 165 aa17.46■□□□□ 0.38
SNX1-210ENST00000560260 LSAMPQ13449 338 aa17.46■□□□□ 0.38
SNX1-210ENST00000560260 TRIM63Q969Q1 353 aa17.46■□□□□ 0.38
SNX1-210ENST00000560260 TINAGL1Q9GZM7 467 aaPredicted RBP17.46■□□□□ 0.38
SNX1-210ENST00000560260 SRRQ9GZT4 340 aa17.46■□□□□ 0.38
SNX1-210ENST00000560260 SDHAF2Q9NX18 166 aa17.46■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms