RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 TSPAN7P41732 249 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 GINS3Q9BRX5 216 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 IGKV1-6A0A0C4DH72 117 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 RNF212BA8MTL3 300 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 LINC00587B1AMM8 73 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 ETV2O00321 342 aaPredicted RBP10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 TAS2R30P59541 319 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 RPS23P62266 143 aaKnown RBP10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 FOXO1Q12778 655 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 ABLIM2Q6H8Q1 611 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 Q6ZRM9 215 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 MRPL41Q8IXM3 137 aaKnown RBP10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 DRAM1Q8N682 238 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 MRPL30Q8TCC3 161 aaKnown RBP10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 SERTAD4Q9NUC0 356 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 DSPP15924 2871 aaKnown RBP10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 PQLC2LA1A4F0 135 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 ZG16O60844 167 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 RAMP3O60896 148 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 NDUFB7P17568 137 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 RTP5Q14D33 572 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 OR10G4Q8NGN3 311 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 OR10G9Q8NGN4 311 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 OR10G7Q8NGN6 311 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 OR5P3Q8WZ94 311 aa10.32□□□□□ -0.76
CCDC88C-211ENST00000556726 PPP5D1E7EU14 171 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 DVL1O14640 695 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 PAGE4O60829 102 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 SELENOVP59797 346 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 OR13D1Q8NGV5 346 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 POM121L2Q96KW2 1035 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 RNF122Q9H9V4 155 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 CA11O75493 328 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 S1PR2O95136 353 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 HBZP02008 142 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 S100A8P05109 93 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 DEFA6Q01524 100 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 ZNF66Q6ZN08 573 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 TCEAL7Q9BRU2 100 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 RBKSQ9H477 322 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 DOK5Q9P104 306 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 KIAA1456Q9P272 454 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 NUP210LQ5VU65 1888 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 ZGRF1Q86YA3 2104 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 SPG11Q96JI7 2443 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 ZNF705FA8MVS1 300 aaPredicted RBP10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 H0Y980 276 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 OR8U8P0C7N1 319 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 ZNF705DP0CH99 300 aaPredicted RBP10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 ZNF705BP0CI00 300 aaPredicted RBP10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 MPV17P39210 176 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 MDH2P40926 338 aaKnown RBP10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 GFRA1P56159 465 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 S100A12P80511 92 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 ZNF718Q3SXZ3 478 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 RNF212Q495C1 297 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 VWA1Q6PCB0 445 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 CRIP3Q6Q6R5 217 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 OR4D5Q8NGN0 318 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 RPH3ALQ9UNE2 315 aa10.31□□□□□ -0.76
CCDC88C-211ENST00000556726 UCP2P55851 309 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 DTD1Q8TEA8 209 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 ZPBPQ9BS86 351 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 OPN3Q9H1Y3 402 aaPredicted RBP10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 CLDN34H7C241 214 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 PGA5P0DJD9 388 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 UCP1P25874 307 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 SSTP61278 116 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 HIST1H3AP68431 136 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 GFI1BQ5VTD9 330 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 H1FXQ92522 213 aaKnown RBP10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 MUCL1Q96DR8 90 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 OR51I2Q9H344 312 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 MUC3AQ02505 3323 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 TRAV38-1A0A0B4J264 116 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 CEACAM18A8MTB9 384 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 K7N7A8 449 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 COL10A1Q03692 680 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 PSG7Q13046 419 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 TRIP6Q15654 476 aaKnown RBP10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 BATFQ16520 125 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 LILRB1Q8NHL6 650 aaPredicted RBP10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 KLF14Q8TD94 323 aaPredicted RBP10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 GATAD1Q8WUU5 269 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 PLEKHA3Q9HB20 300 aa10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.3□□□□□ -0.76
CCDC88C-211ENST00000556726 CLN5O75503 358 aa10.29□□□□□ -0.76
CCDC88C-211ENST00000556726 DKK1O94907 266 aa10.29□□□□□ -0.76
CCDC88C-211ENST00000556726 UCP3P55916 312 aa10.29□□□□□ -0.76
CCDC88C-211ENST00000556726 LYG1Q8N1E2 194 aa10.29□□□□□ -0.76
CCDC88C-211ENST00000556726 Q8WTZ3 238 aa10.29□□□□□ -0.76
CCDC88C-211ENST00000556726 PINX1Q96BK5 328 aaKnown RBP10.29□□□□□ -0.76
CCDC88C-211ENST00000556726 MALSU1Q96EH3 234 aa10.29□□□□□ -0.76
CCDC88C-211ENST00000556726 FGF23Q9GZV9 251 aaPredicted RBP10.29□□□□□ -0.76
CCDC88C-211ENST00000556726 SRP19P09132 144 aaKnown RBP10.29□□□□□ -0.76
CCDC88C-211ENST00000556726 FAM3BP58499 235 aaPredicted RBP10.29□□□□□ -0.76
CCDC88C-211ENST00000556726 IL15RAQ13261 267 aa10.29□□□□□ -0.76
CCDC88C-211ENST00000556726 MOGAT3Q86VF5 341 aa10.29□□□□□ -0.76
CCDC88C-211ENST00000556726 OR5D13Q8NGL4 314 aa10.29□□□□□ -0.76
CCDC88C-211ENST00000556726 WDYHV1Q96HA8 205 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms