RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 CD109Q6YHK3 1445 aa4.69□□□□□ -1.66
VPS29-210ENST00000552130 TONSLQ96HA7 1378 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 KDM5BQ9UGL1 1544 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 TRAV36DV7A0A075B6V5 113 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 hCG_1818297A0A087WSY0 165 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 C9orf170A2RU37 121 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 A8MT66 165 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 BGLAPP02818 100 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 C8GP07360 202 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 OR4Q2P0C623 313 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 PGAM2P15259 253 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 ZNF25P17030 456 aaPredicted RBP4.68□□□□□ -1.66
VPS29-210ENST00000552130 BLVRBP30043 206 aaPredicted RBP4.68□□□□□ -1.66
VPS29-210ENST00000552130 LINC00205P59089 165 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 HERVK_113P61574 105 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 RRAS2P62070 204 aaPredicted RBP4.68□□□□□ -1.66
VPS29-210ENST00000552130 EMX2Q04743 252 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 RHEBQ15382 184 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 GRK1Q15835 563 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 C2orf66Q6UXQ4 117 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 SHISA6Q6ZSJ9 500 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 DRAM1Q8N682 238 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 DCAF4L2Q8NA75 395 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 OR1L1Q8NH94 360 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 NPRL2Q8WTW4 380 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 PTX4Q96A99 478 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 PDXPQ96GD0 296 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 TSPAN32Q96QS1 320 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 SYT15Q9BQS2 421 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 MND1Q9BWT6 205 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 TBL1XR1Q9BZK7 514 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 PARP12Q9H0J9 701 aaKnown RBP4.68□□□□□ -1.66
VPS29-210ENST00000552130 PTGES2Q9H7Z7 377 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 DHRS4-AS1Q9P1J3 65 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 FIS1Q9Y3D6 152 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 SMG6Q86US8 1419 aaKnown RBP4.68□□□□□ -1.66
VPS29-210ENST00000552130 IGSF9BQ9UPX0 1349 aa4.68□□□□□ -1.66
VPS29-210ENST00000552130 DCCP43146 1447 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 A0A096LPI6 279 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 CCL15-CCL14A0A0B4J2E2 113 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 C5orf63A6NC05 138 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 OR4C45A6NMZ5 311 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 TMEM250H0YL14 139 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 MRASO14807 208 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 SLC37A4O43826 429 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 TNFSF15O95150 251 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 IGF2P01344 180 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 CSN2P05814 226 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 CTSEP14091 401 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 ZNF30P17039 623 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 RPL7P18124 248 aaKnown RBP4.67□□□□□ -1.66
VPS29-210ENST00000552130 PSMB3P49720 205 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 KLF3P57682 345 aaPredicted RBP4.67□□□□□ -1.66
VPS29-210ENST00000552130 LINC01547P58512 204 aaPredicted RBP4.67□□□□□ -1.66
VPS29-210ENST00000552130 CRADDP78560 199 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 FABP9Q0Z7S8 132 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 RUNX3Q13761 415 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 TWIST1Q15672 202 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 SSX1Q16384 188 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 CCL15Q16663 113 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 LTC4SQ16873 150 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 HSD17B13Q7Z5P4 300 aaPredicted RBP4.67□□□□□ -1.66
VPS29-210ENST00000552130 LINC00596Q86U02 117 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 MDP1Q86V88 176 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 TMEM75Q8N9X5 138 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 OR2T27Q8NH04 317 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 ITLN1Q8WWA0 313 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 STARD4Q96DR4 205 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 PAXXQ9BUH6 204 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 ZNF436Q9C0F3 470 aaPredicted RBP4.67□□□□□ -1.66
VPS29-210ENST00000552130 C20orf27Q9GZN8 174 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 PBOV1Q9GZY1 135 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 CDC42EP4Q9H3Q1 356 aaKnown RBP4.67□□□□□ -1.66
VPS29-210ENST00000552130 SLC23A2Q9UGH3 650 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 ANAPC10Q9UM13 185 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 U3KQ87 197 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 VIRMAQ69YN4 1812 aaKnown RBP4.67□□□□□ -1.66
VPS29-210ENST00000552130 WDR62O43379 1518 aa4.67□□□□□ -1.66
VPS29-210ENST00000552130 GON4LQ3T8J9 2241 aa4.66□□□□□ -1.66
VPS29-210ENST00000552130 ROBO3Q96MS0 1386 aa4.66□□□□□ -1.66
VPS29-210ENST00000552130 TMED7-TICAM2A0A0A6YYA0 188 aa4.66□□□□□ -1.66
VPS29-210ENST00000552130 ZNF705GA8MUZ8 300 aaPredicted RBP4.66□□□□□ -1.66
VPS29-210ENST00000552130 A8MXK9 166 aa4.66□□□□□ -1.66
VPS29-210ENST00000552130 DNASE2O00115 360 aaPredicted RBP4.66□□□□□ -1.66
VPS29-210ENST00000552130 COX7A2P2O60397 106 aa4.66□□□□□ -1.66
VPS29-210ENST00000552130 PIAS1O75925 651 aa4.66□□□□□ -1.66
VPS29-210ENST00000552130 ZNF682O95780 498 aa4.66□□□□□ -1.66
VPS29-210ENST00000552130 SOD3P08294 240 aa4.66□□□□□ -1.66
VPS29-210ENST00000552130 SCGB1C2P0DMR2 95 aa4.66□□□□□ -1.66
VPS29-210ENST00000552130 RPS3P23396 243 aaKnown RBP eCLIP4.66□□□□□ -1.664e-6■■■■□ 22.8
VPS29-210ENST00000552130 LHX2P50458 406 aa4.66□□□□□ -1.66
VPS29-210ENST00000552130 ZNF140P52738 457 aaPredicted RBP4.66□□□□□ -1.66
VPS29-210ENST00000552130 HERVK_113P63121 156 aa4.66□□□□□ -1.66
VPS29-210ENST00000552130 TNFAIP6P98066 277 aaPredicted RBP4.66□□□□□ -1.66
VPS29-210ENST00000552130 ZNF239Q16600 458 aaKnown RBP4.66□□□□□ -1.66
VPS29-210ENST00000552130 ORMDL2Q53FV1 153 aa4.66□□□□□ -1.66
VPS29-210ENST00000552130 RNASE10Q5GAN6 216 aaKnown RBP4.66□□□□□ -1.66
VPS29-210ENST00000552130 KRTAP5-1Q6L8H4 278 aa4.66□□□□□ -1.66
VPS29-210ENST00000552130 ZNF773Q6PK81 442 aa4.66□□□□□ -1.66
VPS29-210ENST00000552130 TCF23Q7RTU1 214 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms