RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 FOXG1P55316 489 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-237ENST00000539504 UBE2G2P60604 165 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 PAX5Q02548 391 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 ZNF816Q0VGE8 651 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-237ENST00000539504 SRSF7Q16629 238 aaKnown RBP eCLIP9.55□□□□□ -0.88
SYNE1-237ENST00000539504 KRTAP27-1Q3LI81 207 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 LBHQ53QV2 105 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-237ENST00000539504 ACSM6Q6P461 480 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 KCNIP4Q6PIL6 250 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 HIPK2Q9H2X6 1198 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 CLN8Q9UBY8 286 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 CHD3Q12873 2000 aaKnown RBP9.55□□□□□ -0.88
SYNE1-237ENST00000539504 ZNF320A2RRD8 509 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 CA6P23280 308 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 CEACAM6P40199 344 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 SPINK9Q5DT21 86 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 ZNF573Q86YE8 665 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 SAXO1Q8IYX7 474 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 FGFRL1Q8N441 504 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 OR5A2Q8NGI9 324 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 ACTR3CQ9C0K3 210 aaPredicted RBP9.55□□□□□ -0.88
SYNE1-237ENST00000539504 CBLN4Q9NTU7 201 aa9.55□□□□□ -0.88
SYNE1-237ENST00000539504 CTXND1A0A1B0GTU2 59 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 LRP5LA4QPB2 252 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 EREGO14944 169 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 RHBDL1O75783 438 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 CRYAAP02489 173 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 OR4A8P0C604 315 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 SPCS3P61009 180 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 PRSS8Q16651 343 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 IQCJQ1A5X6 159 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 ACOT6Q3I5F7 207 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-237ENST00000539504 ACY3Q96HD9 319 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 FREM1Q5H8C1 2179 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 CACNA1EQ15878 2313 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 IFNL4K9M1U5 179 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 CASP6P55212 293 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 VASH2Q86V25 355 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 LRP11Q86VZ4 500 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 TGIF2LYQ8IUE0 185 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 Q8NFD4 153 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 RNASEH2CQ8TDP1 164 aaKnown RBP9.54□□□□□ -0.88
SYNE1-237ENST00000539504 TMEM170AQ8WVE7 144 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 TP53TG5Q9Y2B4 290 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 AHCTF1Q8WYP5 2266 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 LILRA1O75019 489 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 KLF7O75840 302 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-237ENST00000539504 COX5AP20674 150 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 HOXA6P31267 233 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 G6PCP35575 357 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 GNG3P63215 75 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 ABLIM2Q6H8Q1 611 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 OR10P1Q8NGE3 313 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 IFI44Q8TCB0 444 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 HLA-CQ95604 372 aa9.54□□□□□ -0.88
SYNE1-237ENST00000539504 NEIL1Q96FI4 390 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-237ENST00000539504 TMEM250H0YL14 139 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 CFIP05156 583 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 GNB2P62879 340 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 ZXDAP98168 799 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 ZNF585BQ52M93 769 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 TUSC5Q8IXB3 177 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 OR2Y1Q8NGV0 311 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 C1QTNF9BB2RNN3 333 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 SOX15O60248 233 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 MSMO1Q15800 293 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 CYB5R2Q6BCY4 276 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 ANAPC16Q96DE5 110 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 SDSLQ96GA7 329 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 ZNF576Q9H609 170 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 FKBP11Q9NYL4 201 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 TRAPPC1Q9Y5R8 145 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 C11orf94C9JXX5 98 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 FGF5P12034 268 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 HNF1AP20823 631 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 CNN1P51911 297 aaKnown RBP9.53□□□□□ -0.88
SYNE1-237ENST00000539504 TNFRSF9Q07011 255 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 COLCA1Q6ZS62 124 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 DRAM1Q8N682 238 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 DOCK11Q5JSL3 2073 aa9.53□□□□□ -0.88
SYNE1-237ENST00000539504 GALR2O43603 387 aaPredicted RBP9.52□□□□□ -0.88
SYNE1-237ENST00000539504 TFF3Q07654 80 aa9.52□□□□□ -0.88
SYNE1-237ENST00000539504 IL11RAQ14626 422 aa9.52□□□□□ -0.88
SYNE1-237ENST00000539504 RNPS1Q15287 305 aaKnown RBP9.52□□□□□ -0.88
SYNE1-237ENST00000539504 ZNF705AQ6ZN79 300 aaPredicted RBP9.52□□□□□ -0.88
SYNE1-237ENST00000539504 AGMATQ9BSE5 352 aa9.52□□□□□ -0.88
SYNE1-237ENST00000539504 TMEM147Q9BVK8 224 aa9.52□□□□□ -0.88
SYNE1-237ENST00000539504 PHF7Q9BWX1 381 aaPredicted RBP9.52□□□□□ -0.88
SYNE1-237ENST00000539504 OR6C3Q9NZP0 311 aa9.52□□□□□ -0.88
SYNE1-237ENST00000539504 SYNGR4O95473 234 aa9.52□□□□□ -0.89
SYNE1-237ENST00000539504 MBP02144 154 aa9.52□□□□□ -0.89
SYNE1-237ENST00000539504 RPL29P47914 159 aaKnown RBP9.52□□□□□ -0.89
SYNE1-237ENST00000539504 LYSMD4Q5XG99 296 aa9.52□□□□□ -0.89
SYNE1-237ENST00000539504 PYGO2Q9BRQ0 406 aa9.52□□□□□ -0.89
SYNE1-237ENST00000539504 SH2D2AQ9NP31 389 aa9.52□□□□□ -0.89
SYNE1-237ENST00000539504 CCKARP32238 428 aa9.52□□□□□ -0.89
SYNE1-237ENST00000539504 MPLP40238 635 aa9.52□□□□□ -0.89
SYNE1-237ENST00000539504 CXCL12P48061 93 aa9.52□□□□□ -0.89
SYNE1-237ENST00000539504 NUTF2P61970 127 aaKnown RBP9.52□□□□□ -0.89
SYNE1-237ENST00000539504 PPP1CBP62140 327 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms