RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 CLEC1AQ8NC01 280 aa4.65□□□□□ -1.67
CD44-236ENST00000533222 ADAD2Q8NCV1 583 aaKnown RBP4.65□□□□□ -1.67
CD44-236ENST00000533222 OR10G9Q8NGN4 311 aa4.65□□□□□ -1.67
CD44-236ENST00000533222 OR1L3Q8NH93 324 aa4.65□□□□□ -1.67
CD44-236ENST00000533222 PLPPR1Q8TBJ4 325 aa4.65□□□□□ -1.67
CD44-236ENST00000533222 HMGB4Q8WW32 186 aa4.65□□□□□ -1.67
CD44-236ENST00000533222 FGF11Q92914 225 aa4.65□□□□□ -1.67
CD44-236ENST00000533222 RNF183Q96D59 192 aa4.65□□□□□ -1.67
CD44-236ENST00000533222 SDSLQ96GA7 329 aa4.65□□□□□ -1.67
CD44-236ENST00000533222 DUX3Q96PT4 197 aa4.65□□□□□ -1.67
CD44-236ENST00000533222 SPIN2AQ99865 258 aa4.65□□□□□ -1.67
CD44-236ENST00000533222 SPIN2BQ9BPZ2 258 aa4.65□□□□□ -1.67
CD44-236ENST00000533222 EIF5A2Q9GZV4 153 aaKnown RBP4.65□□□□□ -1.67
CD44-236ENST00000533222 MAP1LC3AQ9H492 121 aa4.65□□□□□ -1.67
CD44-236ENST00000533222 POMKQ9H5K3 350 aa4.65□□□□□ -1.67
CD44-236ENST00000533222 SLC25A10Q9UBX3 287 aaPredicted RBP4.65□□□□□ -1.67
CD44-236ENST00000533222 ANXA10Q9UJ72 324 aa4.65□□□□□ -1.67
CD44-236ENST00000533222 FOXA2Q9Y261 457 aaPredicted RBP4.65□□□□□ -1.67
CD44-236ENST00000533222 NEUROG3Q9Y4Z2 214 aa4.65□□□□□ -1.67
CD44-236ENST00000533222 UBR2Q8IWV8 1755 aa4.65□□□□□ -1.67
CD44-236ENST00000533222 MYO18AQ92614 2054 aaKnown RBP4.65□□□□□ -1.67
CD44-236ENST00000533222 RLFQ13129 1914 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 MYLKQ15746 1914 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 TRAV9-2A0A087WT02 112 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 TRBV9A0A0B4J1U6 114 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 A0A1W2PR77 199 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 A0A1W2PRF3 423 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 A0A1W2PRM7 423 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 C7orf71A4D174 169 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 RBFOX3A6NFN3 312 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 CASTOR2A6NHX0 329 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 LINC01548A6NM66 108 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 A8MT66 165 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 TMEM262E9PQX1 116 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.64□□□□□ -1.67
CD44-236ENST00000533222 GEMIN2O14893 280 aaKnown RBP4.64□□□□□ -1.67
CD44-236ENST00000533222 SYNGR1O43759 233 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 ZNF253O75346 499 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 MPZL1O95297 269 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 CYB5AP00167 134 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 TNFP01375 233 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 OR9G9P0C7N8 305 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 ZNF286BP0CG31 522 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 FAM106CPP0CH98 169 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 CT45A6P0DMU7 189 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 CT45A5P0DMU8 189 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 CT45A7P0DMV0 189 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 ORM2P19652 201 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 PMCHP20382 165 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 PRPH2P23942 346 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 CRYBB3P26998 211 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 CD34P28906 385 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 TSFMP43897 325 aaKnown RBP4.64□□□□□ -1.67
CD44-236ENST00000533222 EFNA5P52803 228 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 MTCP1P56278 107 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 SMIM11AP58511 58 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 DCAF4L1Q3SXM0 396 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 FAM106AQ4KMX7 169 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 CT45A1Q5HYN5 189 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 VAX1Q5SQQ9 334 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 GLYATL3Q5SZD4 288 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 BVES-AS1Q5T3Y7 98 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 SUMO4Q6EEV6 95 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 SPSB3Q6PJ21 355 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 PLXDC2Q6UX71 529 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.64□□□□□ -1.67
CD44-236ENST00000533222 BHLHA9Q7RTU4 235 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 ZNF429Q86V71 674 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 ZNF595Q8IYB9 648 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 OR10P1Q8NGE3 313 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 OR51G1Q8NGK1 321 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 OR2K2Q8NGT1 345 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 CT45A3Q8NHU0 189 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 CMTM2Q8TAZ6 248 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 DDB2Q92466 427 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 PIGCQ92535 297 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 NUS1Q96E22 293 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 S100A16Q96FQ6 103 aaKnown RBP4.64□□□□□ -1.67
CD44-236ENST00000533222 PERPQ96FX8 193 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 AP1S3Q96PC3 154 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 RAB40CQ96S21 281 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 FEVQ99581 238 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 ZNF670Q9BS34 389 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 TMEM39BQ9GZU3 492 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 FAM124BQ9H5Z6 455 aaPredicted RBP4.64□□□□□ -1.67
CD44-236ENST00000533222 UBTD1Q9HAC8 227 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 NPVFQ9HCQ7 196 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 ARL15Q9NXU5 204 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 KLHL13Q9P2N7 655 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 SLC2A6Q9UGQ3 507 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 IL36AQ9UHA7 158 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 PRO0628Q9UI54 55 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 SCML2Q9UQR0 700 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 WASHC3Q9Y3C0 194 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 NOP16Q9Y3C1 178 aaKnown RBP4.64□□□□□ -1.67
CD44-236ENST00000533222 PAM16Q9Y3D7 125 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 LOXL2Q9Y4K0 774 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 MCM3APO60318 1980 aa4.64□□□□□ -1.67
CD44-236ENST00000533222 KAT6AQ92794 2004 aa4.63□□□□□ -1.67
CD44-236ENST00000533222 LOC102723996A0A087X1L8 192 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms