RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	OR52R1	Q8NGF1	315 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	OR52I1	Q8NGK6	324 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	OR52I2	Q8NH67	350 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	OR2AE1	Q8NHA4	323 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	ATP6V0E2	Q8NHE4	81 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	KIR2DL5B	Q8NHK3	375 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	GMPPA	Q96IJ6	420 aa	Predicted RBP	4.69	□□□□□ -1.66
CD44-231	ENST00000531110	ZNF582	Q96NG8	517 aa	Predicted RBP	4.69	□□□□□ -1.66
CD44-231	ENST00000531110	OR6C1	Q96RD1	312 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	P2RX4	Q99571	388 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	NDFIP1	Q9BT67	221 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	RBM24	Q9BX46	236 aa	Known RBP	4.69	□□□□□ -1.66
CD44-231	ENST00000531110	COA1	Q9GZY4	146 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	UBTD1	Q9HAC8	227 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	IL36G	Q9NZH8	169 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	MTFP1	Q9UDX5	166 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	VDAC3	Q9Y277	283 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	ASF1A	Q9Y294	204 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	TNRC6C	Q9HCJ0	1690 aa	Known RBP	4.69	□□□□□ -1.66
CD44-231	ENST00000531110	TRIP11	Q15643	1979 aa		4.69	□□□□□ -1.66
CD44-231	ENST00000531110	ZNF106	Q9H2Y7	1883 aa	Known RBP	4.69	□□□□□ -1.66
CD44-231	ENST00000531110	OR51F1	A6NGY5	319 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	ZNF860	A6NHJ4	632 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	FABP5P3	A8MUU1	101 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110		C9JQL5	133 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	C17orf112	F2Z3M2	114 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110		F8W1H4	67 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110		H3BMH7	237 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110		M0R1X1	148 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	PLPP3	O14495	311 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	NPIPB7	O75200	414 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	GCM2	O75603	506 aa	Predicted RBP	4.68	□□□□□ -1.66
CD44-231	ENST00000531110	EDN1	P05305	212 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	CRYGD	P07320	174 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	ZNF17	P17021	662 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	CSRP1	P21291	193 aa	Known RBP	4.68	□□□□□ -1.66
CD44-231	ENST00000531110	SRI	P30626	198 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	PRSS3	P35030	304 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	SRP14	P37108	136 aa	Known RBP	4.68	□□□□□ -1.66
CD44-231	ENST00000531110	LPAR6	P43657	344 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	PPIC	P45877	212 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	ASCL1	P50553	236 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	RPL8	P62917	257 aa	Known RBP	4.68	□□□□□ -1.66
CD44-231	ENST00000531110	HLA-DRB3	P79483	266 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	KLRD1	Q13241	179 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	MELK	Q14680	651 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	ADIRF	Q15847	76 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	BATF	Q16520	125 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	TDRG1	Q3Y452	100 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	SFXN4	Q6P4A7	337 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	UNQ5815/PRO19632	Q6UWF5	114 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	ERAS	Q7Z444	233 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	CDC20B	Q86Y33	519 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	ZNF101	Q8IZC7	436 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	ZIC4	Q8N9L1	334 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	OR4F17	Q8NGA8	305 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	OR2G3	Q8NGZ4	309 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	C8orf46	Q8TAG6	207 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	PTPMT1	Q8WUK0	201 aa	Predicted RBP	4.68	□□□□□ -1.66
CD44-231	ENST00000531110	MBD3L1	Q8WWY6	194 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	AQP3	Q92482	292 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	NDRG1	Q92597	394 aa	Known RBP	4.68	□□□□□ -1.66
CD44-231	ENST00000531110	WBP2	Q969T9	261 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	SMIM19	Q96E16	107 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	RBMXL1	Q96E39	390 aa	Known RBP	4.68	□□□□□ -1.66
CD44-231	ENST00000531110	UHRF2	Q96PU4	802 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	OR4F4	Q96R69	305 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	CDX2	Q99626	313 aa	Predicted RBP	4.68	□□□□□ -1.66
CD44-231	ENST00000531110	NKX3-1	Q99801	234 aa	Predicted RBP	4.68	□□□□□ -1.66
CD44-231	ENST00000531110	TSSK6	Q9BXA6	273 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	MRPL32	Q9BYC8	188 aa	Known RBP	4.68	□□□□□ -1.66
CD44-231	ENST00000531110	TMEM231	Q9H6L2	316 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	ST20	Q9HBF5	79 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	TMEM30A	Q9NV96	361 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	KLRF1	Q9NZS2	232 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	FBXL17	Q9UF56	701 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	YARS2	Q9Y2Z4	477 aa	Known RBP	4.68	□□□□□ -1.66
CD44-231	ENST00000531110	RFNG	Q9Y644	331 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	ANK1	P16157	1881 aa		4.68	□□□□□ -1.66
CD44-231	ENST00000531110	ARID2	Q68CP9	1835 aa		4.67	□□□□□ -1.66
CD44-231	ENST00000531110	ROBO1	Q9Y6N7	1651 aa		4.67	□□□□□ -1.66
CD44-231	ENST00000531110	LY75	O60449	1722 aa		4.67	□□□□□ -1.66
CD44-231	ENST00000531110	WDR90	Q96KV7	1748 aa		4.67	□□□□□ -1.66
CD44-231	ENST00000531110	TECPR2	O15040	1411 aa		4.67	□□□□□ -1.66
CD44-231	ENST00000531110	TRAV36DV7	A0A075B6V5	113 aa		4.67	□□□□□ -1.66
CD44-231	ENST00000531110	IGHV4OR15-8	A0A075B7B6	117 aa		4.67	□□□□□ -1.66
CD44-231	ENST00000531110	TRAV1-1	A0A0B4J248	108 aa		4.67	□□□□□ -1.66
CD44-231	ENST00000531110	DUXB	A0A1W2PPF3	345 aa		4.67	□□□□□ -1.66
CD44-231	ENST00000531110		A0A1W2PRD5	423 aa		4.67	□□□□□ -1.66
CD44-231	ENST00000531110	LILRA5	A6NI73	299 aa		4.67	□□□□□ -1.66
CD44-231	ENST00000531110		F5H768	121 aa		4.67	□□□□□ -1.66
CD44-231	ENST00000531110		H0YL77	283 aa		4.67	□□□□□ -1.66
CD44-231	ENST00000531110		H3BRM9	83 aa		4.67	□□□□□ -1.66
CD44-231	ENST00000531110	KLF8	O95600	359 aa	Predicted RBP	4.67	□□□□□ -1.66
CD44-231	ENST00000531110	HLA-H	P01893	362 aa		4.67	□□□□□ -1.66
CD44-231	ENST00000531110	EIF4E	P06730	217 aa	Known RBP	4.67	□□□□□ -1.66
CD44-231	ENST00000531110	PFN1	P07737	140 aa	Known RBP	4.67	□□□□□ -1.66
CD44-231	ENST00000531110	AKAIN1	P0CW23	69 aa		4.67	□□□□□ -1.66
CD44-231	ENST00000531110	NTS	P30990	170 aa		4.67	□□□□□ -1.66
CD44-231	ENST00000531110	CDKN1A	P38936	164 aa		4.67	□□□□□ -1.66

Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms