RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 NOTOA8MTQ0 251 aa16.28■□□□□ 0.2
VPS28-206ENST00000526734 TRDCB7Z8K6 153 aa16.28■□□□□ 0.2
VPS28-206ENST00000526734 PF4P02776 101 aa16.28■□□□□ 0.2
VPS28-206ENST00000526734 SOX6P35712 828 aa16.28■□□□□ 0.2
VPS28-206ENST00000526734 KIR2DS1Q14954 304 aa16.28■□□□□ 0.2
VPS28-206ENST00000526734 MMDQ15546 238 aa16.28■□□□□ 0.2
VPS28-206ENST00000526734 C5orf24Q7Z6I8 188 aa16.28■□□□□ 0.2
VPS28-206ENST00000526734 OR4A4PQ8NGN8 299 aa16.28■□□□□ 0.2
VPS28-206ENST00000526734 PHF21AQ96BD5 680 aa16.28■□□□□ 0.2
VPS28-206ENST00000526734 NOL4LQ96MY1 436 aaPredicted RBP16.28■□□□□ 0.2
VPS28-206ENST00000526734 CHCHD6Q9BRQ6 235 aa16.28■□□□□ 0.2
VPS28-206ENST00000526734 RRP15Q9Y3B9 282 aaKnown RBP16.28■□□□□ 0.2
VPS28-206ENST00000526734 ST8SIA5O15466 376 aa16.27■□□□□ 0.2
VPS28-206ENST00000526734 SCGNO76038 276 aa16.27■□□□□ 0.2
VPS28-206ENST00000526734 HIST1H1DP16402 221 aaKnown RBP16.27■□□□□ 0.2
VPS28-206ENST00000526734 MC5RP33032 325 aa16.27■□□□□ 0.2
VPS28-206ENST00000526734 CEACAM6P40199 344 aa16.27■□□□□ 0.2
VPS28-206ENST00000526734 BEAN1Q3B7T3 259 aa16.27■□□□□ 0.2
VPS28-206ENST00000526734 C10orf99Q6UWK7 81 aa16.27■□□□□ 0.2
VPS28-206ENST00000526734 WFDC9Q8NEX5 89 aa16.27■□□□□ 0.2
VPS28-206ENST00000526734 ZNF251Q9BRH9 671 aa16.27■□□□□ 0.2
VPS28-206ENST00000526734 OR5H14A6NHG9 310 aa16.26■□□□□ 0.19
VPS28-206ENST00000526734 RAB27BO00194 218 aa16.26■□□□□ 0.19
VPS28-206ENST00000526734 MFNGO00587 321 aa16.26■□□□□ 0.19
VPS28-206ENST00000526734 OR5H8P0DN80 308 aa16.26■□□□□ 0.19
VPS28-206ENST00000526734 OR3A3P47888 321 aa16.26■□□□□ 0.19
VPS28-206ENST00000526734 ACTBP60709 375 aa16.26■□□□□ 0.19
VPS28-206ENST00000526734 RPL23AP62750 156 aaKnown RBP16.26■□□□□ 0.19
VPS28-206ENST00000526734 PNLIPRP3Q17RR3 467 aa16.26■□□□□ 0.19
VPS28-206ENST00000526734 TEX38Q6PEX7 206 aa16.26■□□□□ 0.19
VPS28-206ENST00000526734 ZNF329Q86UD4 541 aa16.26■□□□□ 0.19
VPS28-206ENST00000526734 C1QL4Q86Z23 238 aa16.26■□□□□ 0.19
VPS28-206ENST00000526734 AGMATQ9BSE5 352 aa16.26■□□□□ 0.19
VPS28-206ENST00000526734 ZNF107Q9UII5 783 aaPredicted RBP16.26■□□□□ 0.19
VPS28-206ENST00000526734 G3V4G9 280 aa16.25■□□□□ 0.19
VPS28-206ENST00000526734 NBR2O15453 112 aa16.25■□□□□ 0.19
VPS28-206ENST00000526734 FABP7O15540 132 aa16.25■□□□□ 0.19
VPS28-206ENST00000526734 RBBP9O75884 186 aa16.25■□□□□ 0.19
VPS28-206ENST00000526734 IGF1P05019 195 aa16.25■□□□□ 0.19
VPS28-206ENST00000526734 FCGR3AP08637 254 aa16.25■□□□□ 0.19
VPS28-206ENST00000526734 SCTP09683 121 aa16.25■□□□□ 0.19
VPS28-206ENST00000526734 CD33P20138 364 aa16.25■□□□□ 0.19
VPS28-206ENST00000526734 F2RL1P55085 397 aa16.25■□□□□ 0.19
VPS28-206ENST00000526734 PLA2G7Q13093 441 aa16.25■□□□□ 0.19
VPS28-206ENST00000526734 SRSF7Q16629 238 aaKnown RBP eCLIP16.25■□□□□ 0.19
VPS28-206ENST00000526734 REC114Q7Z4M0 266 aa16.25■□□□□ 0.19
VPS28-206ENST00000526734 KCTD7Q96MP8 289 aa16.25■□□□□ 0.19
VPS28-206ENST00000526734 CABLES2Q9BTV7 478 aa16.25■□□□□ 0.19
VPS28-206ENST00000526734 TOLLIPQ9H0E2 274 aa16.25■□□□□ 0.19
VPS28-206ENST00000526734 C11orf54Q9H0W9 315 aaPredicted RBP16.25■□□□□ 0.19
VPS28-206ENST00000526734 OR1A1Q9P1Q5 309 aa16.25■□□□□ 0.19
VPS28-206ENST00000526734 KIAA1456Q9P272 454 aa16.25■□□□□ 0.19
VPS28-206ENST00000526734 ZNF221Q9UK13 617 aa16.25■□□□□ 0.19
VPS28-206ENST00000526734 KCNK7Q9Y2U2 307 aa16.25■□□□□ 0.19
VPS28-206ENST00000526734 CMYA5Q8N3K9 4069 aa16.25■□□□□ 0.19
VPS28-206ENST00000526734 DUS4LO95620 317 aaKnown RBP16.24■□□□□ 0.19
VPS28-206ENST00000526734 HLA-DRB1P01911 266 aa16.24■□□□□ 0.19
VPS28-206ENST00000526734 ELANEP08246 267 aa16.24■□□□□ 0.19
VPS28-206ENST00000526734 VDAC1P21796 283 aa16.24■□□□□ 0.19
VPS28-206ENST00000526734 SCAND1P57086 179 aa16.24■□□□□ 0.19
VPS28-206ENST00000526734 MOGAT2Q3SYC2 334 aa16.24■□□□□ 0.19
VPS28-206ENST00000526734 NR2C2APQ86WQ0 139 aa16.24■□□□□ 0.19
VPS28-206ENST00000526734 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.24■□□□□ 0.19
VPS28-206ENST00000526734 NPBQ8NG41 125 aa16.24■□□□□ 0.19
VPS28-206ENST00000526734 RNF5Q99942 180 aa16.24■□□□□ 0.19
VPS28-206ENST00000526734 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.24■□□□□ 0.19
VPS28-206ENST00000526734 NDUFA3O95167 84 aa16.23■□□□□ 0.19
VPS28-206ENST00000526734 TALDO1P37837 337 aa16.23■□□□□ 0.19
VPS28-206ENST00000526734 FOXE3Q13461 319 aa16.23■□□□□ 0.19
VPS28-206ENST00000526734 CXorf66Q5JRM2 361 aaPredicted RBP16.23■□□□□ 0.19
VPS28-206ENST00000526734 FAM131AQ6UXB0 335 aa16.23■□□□□ 0.19
VPS28-206ENST00000526734 Q6ZS49 121 aa16.23■□□□□ 0.19
VPS28-206ENST00000526734 OR5AN1Q8NGI8 311 aa16.23■□□□□ 0.19
VPS28-206ENST00000526734 PARP12Q9H0J9 701 aaKnown RBP16.23■□□□□ 0.19
VPS28-206ENST00000526734 ATG5Q9H1Y0 275 aa16.23■□□□□ 0.19
VPS28-206ENST00000526734 LINC00527Q9UJ94 153 aa16.23■□□□□ 0.19
VPS28-206ENST00000526734 WASHC3Q9Y3C0 194 aa16.23■□□□□ 0.19
VPS28-206ENST00000526734 IGKV1-6A0A0C4DH72 117 aa16.22■□□□□ 0.19
VPS28-206ENST00000526734 LINC01548A6NM66 108 aa16.22■□□□□ 0.19
VPS28-206ENST00000526734 TMEM127O75204 238 aa16.22■□□□□ 0.19
VPS28-206ENST00000526734 CT45A6P0DMU7 189 aa16.22■□□□□ 0.19
VPS28-206ENST00000526734 CT45A5P0DMU8 189 aa16.22■□□□□ 0.19
VPS28-206ENST00000526734 CT45A7P0DMV0 189 aa16.22■□□□□ 0.19
VPS28-206ENST00000526734 SLC2A2P11168 524 aaPredicted RBP16.22■□□□□ 0.19
VPS28-206ENST00000526734 GNB3P16520 340 aa16.22■□□□□ 0.19
VPS28-206ENST00000526734 ARFRP1Q13795 201 aa16.22■□□□□ 0.19
VPS28-206ENST00000526734 C5orf64Q2M2E5 130 aa16.22■□□□□ 0.19
VPS28-206ENST00000526734 RPL39P5Q59GN2 51 aa16.22■□□□□ 0.19
VPS28-206ENST00000526734 RNF152Q8N8N0 203 aa16.22■□□□□ 0.19
VPS28-206ENST00000526734 RCC1LQ96I51 464 aaKnown RBP16.22■□□□□ 0.19
VPS28-206ENST00000526734 ABHD14BQ96IU4 210 aa16.22■□□□□ 0.19
VPS28-206ENST00000526734 HSPB9Q9BQS6 159 aa16.22■□□□□ 0.19
VPS28-206ENST00000526734 GPR61Q9BZJ8 451 aa16.22■□□□□ 0.19
VPS28-206ENST00000526734 RDH8Q9NYR8 311 aa16.22■□□□□ 0.19
VPS28-206ENST00000526734 PLXNB1O43157 2135 aa16.22■□□□□ 0.19
VPS28-206ENST00000526734 A0A0B4J203 849 aa16.21■□□□□ 0.19
VPS28-206ENST00000526734 NUDT19A8MXV4 375 aa16.21■□□□□ 0.19
VPS28-206ENST00000526734 H0YJW9 148 aa16.21■□□□□ 0.19
VPS28-206ENST00000526734 IGHG4P01861 327 aa16.21■□□□□ 0.19
VPS28-206ENST00000526734 DTYMKP23919 212 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms