RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 CD1BP29016 333 aa11.45□□□□□ -0.58
NUP54-216ENST00000514901 PRSS3P35030 304 aa11.45□□□□□ -0.58
NUP54-216ENST00000514901 RAG2P55895 527 aa11.45□□□□□ -0.58
NUP54-216ENST00000514901 DIAPH2-AS1Q14236 149 aa11.45□□□□□ -0.58
NUP54-216ENST00000514901 IGSF11Q5DX21 431 aa11.45□□□□□ -0.58
NUP54-216ENST00000514901 ODF3L1Q8IXM7 274 aa11.45□□□□□ -0.58
NUP54-216ENST00000514901 OR56B4Q8NH76 319 aa11.45□□□□□ -0.58
NUP54-216ENST00000514901 AGMATQ9BSE5 352 aa11.45□□□□□ -0.58
NUP54-216ENST00000514901 IFI27L2Q9H2X8 130 aa11.45□□□□□ -0.58
NUP54-216ENST00000514901 RANBP3Q9H6Z4 567 aaPredicted RBP11.45□□□□□ -0.58
NUP54-216ENST00000514901 BEX1Q9HBH7 125 aa11.45□□□□□ -0.58
NUP54-216ENST00000514901 NDUFA13Q9P0J0 144 aa11.45□□□□□ -0.58
NUP54-216ENST00000514901 RSL24D1Q9UHA3 163 aaKnown RBP11.45□□□□□ -0.58
NUP54-216ENST00000514901 ANXA10Q9UJ72 324 aa11.45□□□□□ -0.58
NUP54-216ENST00000514901 MMP24Q9Y5R2 645 aa11.45□□□□□ -0.58
NUP54-216ENST00000514901 IGKV1D-8A0A087WSZ0 117 aa11.44□□□□□ -0.58
NUP54-216ENST00000514901 SULT1C2O00338 296 aa11.44□□□□□ -0.58
NUP54-216ENST00000514901 ST8SIA5O15466 376 aa11.44□□□□□ -0.58
NUP54-216ENST00000514901 OR2F2O95006 317 aa11.44□□□□□ -0.58
NUP54-216ENST00000514901 HLA-DQB1P01920 261 aa11.44□□□□□ -0.58
NUP54-216ENST00000514901 REG1BP48304 166 aa11.44□□□□□ -0.58
NUP54-216ENST00000514901 CCBE1Q6UXH8 406 aaPredicted RBP11.44□□□□□ -0.58
NUP54-216ENST00000514901 C12orf54Q6X4T0 127 aa11.44□□□□□ -0.58
NUP54-216ENST00000514901 ZNF833PQ6ZTB9 187 aa11.44□□□□□ -0.58
NUP54-216ENST00000514901 BEST4Q8NFU0 473 aa11.44□□□□□ -0.58
NUP54-216ENST00000514901 OR4C13Q8NGP0 309 aa11.44□□□□□ -0.58
NUP54-216ENST00000514901 CFHR4Q92496 578 aa11.44□□□□□ -0.58
NUP54-216ENST00000514901 RBM14Q96PK6 669 aaKnown RBP11.44□□□□□ -0.58
NUP54-216ENST00000514901 RBM38Q9H0Z9 239 aaKnown RBP11.44□□□□□ -0.58
NUP54-216ENST00000514901 C16orf95Q9H693 158 aa11.44□□□□□ -0.58
NUP54-216ENST00000514901 SCPEP1Q9HB40 452 aa11.44□□□□□ -0.58
NUP54-216ENST00000514901 IFT46Q9NQC8 304 aa11.44□□□□□ -0.58
NUP54-216ENST00000514901 RABL2AQ9UBK7 228 aaPredicted RBP11.44□□□□□ -0.58
NUP54-216ENST00000514901 ZNF221Q9UK13 617 aa11.44□□□□□ -0.58
NUP54-216ENST00000514901 RABL2BQ9UNT1 228 aa11.44□□□□□ -0.58
NUP54-216ENST00000514901 GAB2Q9UQC2 676 aa11.44□□□□□ -0.58
NUP54-216ENST00000514901 MRPS7Q9Y2R9 242 aaKnown RBP11.44□□□□□ -0.58
NUP54-216ENST00000514901 SAA2-SAA4A0A096LPE2 208 aa11.43□□□□□ -0.58
NUP54-216ENST00000514901 M0QZK8 103 aa11.43□□□□□ -0.58
NUP54-216ENST00000514901 RGS5O15539 181 aa11.43□□□□□ -0.58
NUP54-216ENST00000514901 SNRNP70P08621 437 aaKnown RBP11.43□□□□□ -0.58
NUP54-216ENST00000514901 SAA2P0DJI9 122 aaPredicted RBP11.43□□□□□ -0.58
NUP54-216ENST00000514901 CD24P25063 80 aa11.43□□□□□ -0.58
NUP54-216ENST00000514901 ARPC4P59998 168 aa11.43□□□□□ -0.58
NUP54-216ENST00000514901 RELBQ01201 579 aa11.43□□□□□ -0.58
NUP54-216ENST00000514901 EBI3Q14213 229 aa11.43□□□□□ -0.58
NUP54-216ENST00000514901 AWAT1Q58HT5 328 aa11.43□□□□□ -0.58
NUP54-216ENST00000514901 TMEM219Q86XT9 240 aa11.43□□□□□ -0.58
NUP54-216ENST00000514901 H1FOOQ8IZA3 346 aaPredicted RBP11.43□□□□□ -0.58
NUP54-216ENST00000514901 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.43□□□□□ -0.58
NUP54-216ENST00000514901 OR2T10Q8NGZ9 312 aa11.43□□□□□ -0.58
NUP54-216ENST00000514901 SLC25A33Q9BSK2 321 aa11.43□□□□□ -0.58
NUP54-216ENST00000514901 CLPSL1A2RUU4 121 aa11.42□□□□□ -0.58
NUP54-216ENST00000514901 CTDSP2O14595 271 aa11.42□□□□□ -0.58
NUP54-216ENST00000514901 CHST1O43916 411 aa11.42□□□□□ -0.58
NUP54-216ENST00000514901 IGKV1D-33P01593 117 aa11.42□□□□□ -0.58
NUP54-216ENST00000514901 IGKV1-33P01594 117 aa11.42□□□□□ -0.58
NUP54-216ENST00000514901 PTHLHP12272 177 aa11.42□□□□□ -0.58
NUP54-216ENST00000514901 TMEM11P17152 192 aa11.42□□□□□ -0.58
NUP54-216ENST00000514901 GPR12P47775 334 aa11.42□□□□□ -0.58
NUP54-216ENST00000514901 OR3A3P47888 321 aa11.42□□□□□ -0.58
NUP54-216ENST00000514901 HES1Q14469 280 aa11.42□□□□□ -0.58
NUP54-216ENST00000514901 C11orf88Q6PI97 169 aa11.42□□□□□ -0.58
NUP54-216ENST00000514901 Q6ZSV7 163 aa11.42□□□□□ -0.58
NUP54-216ENST00000514901 GVQW1Q8N7I0 195 aa11.42□□□□□ -0.58
NUP54-216ENST00000514901 ABHD14BQ96IU4 210 aa11.42□□□□□ -0.58
NUP54-216ENST00000514901 PRSS22Q9GZN4 317 aa11.42□□□□□ -0.58
NUP54-216ENST00000514901 SLIRPQ9GZT3 109 aaKnown RBP11.42□□□□□ -0.58
NUP54-216ENST00000514901 PARP12Q9H0J9 701 aaKnown RBP11.42□□□□□ -0.58
NUP54-216ENST00000514901 NECAP2Q9NVZ3 263 aa11.42□□□□□ -0.58
NUP54-216ENST00000514901 EXTL2Q9UBQ6 330 aa11.42□□□□□ -0.58
NUP54-216ENST00000514901 RNF150Q9ULK6 438 aa11.42□□□□□ -0.58
NUP54-216ENST00000514901 ANAPC10Q9UM13 185 aa11.42□□□□□ -0.58
NUP54-216ENST00000514901 RBM7Q9Y580 266 aaKnown RBP11.42□□□□□ -0.58
NUP54-216ENST00000514901 SLC22A5O76082 557 aa11.41□□□□□ -0.58
NUP54-216ENST00000514901 MOSP00540 346 aa11.41□□□□□ -0.58
NUP54-216ENST00000514901 OR8U9P0C7N5 309 aa11.41□□□□□ -0.58
NUP54-216ENST00000514901 NAT1P18440 290 aa11.41□□□□□ -0.58
NUP54-216ENST00000514901 MC5RP33032 325 aa11.41□□□□□ -0.58
NUP54-216ENST00000514901 LSAMPQ13449 338 aa11.41□□□□□ -0.58
NUP54-216ENST00000514901 SNX29P2Q8IUI4 249 aa11.41□□□□□ -0.58
NUP54-216ENST00000514901 OR5AP2Q8NGF4 316 aa11.41□□□□□ -0.58
NUP54-216ENST00000514901 OR8H1Q8NGG4 311 aa11.41□□□□□ -0.58
NUP54-216ENST00000514901 OR8U1Q8NH10 309 aa11.41□□□□□ -0.58
NUP54-216ENST00000514901 MCFD2Q8NI22 146 aa11.41□□□□□ -0.58
NUP54-216ENST00000514901 GPX8Q8TED1 209 aa11.41□□□□□ -0.58
NUP54-216ENST00000514901 DGCR14Q96DF8 476 aaKnown RBP11.41□□□□□ -0.58
NUP54-216ENST00000514901 EAF1Q96JC9 268 aaPredicted RBP11.41□□□□□ -0.58
NUP54-216ENST00000514901 NABP2Q9BQ15 211 aa11.41□□□□□ -0.58
NUP54-216ENST00000514901 ZNF251Q9BRH9 671 aa11.41□□□□□ -0.58
NUP54-216ENST00000514901 MRPL20Q9BYC9 149 aaKnown RBP11.41□□□□□ -0.58
NUP54-216ENST00000514901 C6orf62Q9GZU0 229 aaPredicted RBP11.41□□□□□ -0.58
NUP54-216ENST00000514901 NXF2Q9GZY0 626 aaKnown RBP11.41□□□□□ -0.58
NUP54-216ENST00000514901 OR2W1Q9Y3N9 320 aa11.41□□□□□ -0.58
NUP54-216ENST00000514901 IGHV3-72A0A0B4J1Y9 119 aa11.4□□□□□ -0.58
NUP54-216ENST00000514901 MDKP21741 143 aaPredicted RBP11.4□□□□□ -0.58
NUP54-216ENST00000514901 LUMP51884 338 aaPredicted RBP11.4□□□□□ -0.58
NUP54-216ENST00000514901 TAS2R46P59540 309 aa11.4□□□□□ -0.58
NUP54-216ENST00000514901 RPL39P5Q59GN2 51 aa11.4□□□□□ -0.58
NUP54-216ENST00000514901 Q8N2B8 174 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms