RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 TRGV3P03979 118 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 KRT7P08729 469 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 TFPTP0C1Z6 253 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 LIPCP11150 499 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 PRPS1L1P21108 318 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 CPN2P22792 545 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 F8A1P23610 371 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 IMPA1P29218 277 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 ETV6P41212 452 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 SERPINB9P50453 376 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 DEFA1P59665 94 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 DEFA3P59666 94 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 POLR2GP62487 172 aaKnown RBP eCLIP2.16□□□□□ -2.06
USP48-209ENST00000487880 MRPS15P82914 257 aaKnown RBP2.16□□□□□ -2.06
USP48-209ENST00000487880 FLOT2Q14254 428 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 ANGPT1Q15389 498 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 ATP6AP1LQ52LC2 224 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 BRMS1LQ5PSV4 323 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 CLVS2Q5SYC1 327 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 C6orf52Q5T4I8 152 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 TTC33Q6PID6 262 aaPredicted RBP2.16□□□□□ -2.06
USP48-209ENST00000487880 ZNF773Q6PK81 442 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 Q6ZQT7 251 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 TCF24Q7RTU0 167 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 CTAGE3PQ8IX95 158 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 DEFB107AQ8IZN7 70 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 ZFP82Q8N141 532 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 GAPTQ8N292 157 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 TCAIMQ8N3R3 496 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 EIF4E3Q8N5X7 224 aaKnown RBP2.16□□□□□ -2.06
USP48-209ENST00000487880 POP5Q969H6 163 aaKnown RBP2.16□□□□□ -2.06
USP48-209ENST00000487880 TMIGD2Q96BF3 282 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 PPWD1Q96BP3 646 aaKnown RBP2.16□□□□□ -2.06
USP48-209ENST00000487880 LRRC39Q96DD0 335 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 APOL4Q9BPW4 351 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 DCUN1D5Q9BTE7 237 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 C9orf16Q9BUW7 83 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 TXNIPQ9H3M7 391 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 PRORYQ9H606 182 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 WDR55Q9H6Y2 383 aaPredicted RBP2.16□□□□□ -2.06
USP48-209ENST00000487880 UCK1Q9HA47 277 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 EFCAB1Q9HAE3 211 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 ZNF443Q9Y2A4 671 aaPredicted RBP2.16□□□□□ -2.06
USP48-209ENST00000487880 ACOT9Q9Y305 439 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 ASB4Q9Y574 426 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 CACNA1GO43497 2377 aa2.16□□□□□ -2.06
USP48-209ENST00000487880 LAMB4A4D0S4 1761 aa2.15□□□□□ -2.06
USP48-209ENST00000487880 ZNF142P52746 1687 aaPredicted RBP2.15□□□□□ -2.06
USP48-209ENST00000487880 PLCH1Q4KWH8 1693 aa2.15□□□□□ -2.06
USP48-209ENST00000487880 NUP205Q92621 2012 aa2.15□□□□□ -2.06
USP48-209ENST00000487880 DIP2CQ9Y2E4 1556 aa2.15□□□□□ -2.06
USP48-209ENST00000487880 VWA8A3KMH1 1905 aa2.15□□□□□ -2.06
USP48-209ENST00000487880 TOGARAM1Q9Y4F4 1720 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 A0A0J9YYE9 177 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 SLC5A10A0PJK1 596 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 J3QRK9 145 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 CCRL2O00421 344 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 COPEO14579 308 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 NOS1APO75052 506 aaPredicted RBP2.15□□□□□ -2.07
USP48-209ENST00000487880 OR5F1O95221 314 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 IFNA14P01570 189 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 TRBC1P01850 177 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 HLA-DRAP01903 254 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 SERPINE1P05121 402 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 BPGMP07738 259 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 COX4I1P13073 169 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 ZNF708P17019 499 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 BGNP21810 368 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 RCVRNP35243 200 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 GPR4P46093 362 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 HAAOP46952 286 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 AQP5P55064 265 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 RAB25P57735 213 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 COPZ1P61923 177 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 SNRPFP62306 86 aaKnown RBP2.15□□□□□ -2.07
USP48-209ENST00000487880 GNA12Q03113 381 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 FADDQ13158 208 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 PMS2P3Q13401 168 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 CEACAM16Q2WEN9 425 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 Q499Y3 187 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 PDPK2PQ6A1A2 396 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 LINC00596Q86U02 117 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 CPNE9Q8IYJ1 553 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 TCTE3Q8IZS6 198 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 C4orf33Q8N1A6 199 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 GLT1D1Q96MS3 346 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 CCDC32Q9BV29 185 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 MAP1LC3CQ9BXW4 147 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 NXF2Q9GZY0 626 aaKnown RBP2.15□□□□□ -2.07
USP48-209ENST00000487880 GAL3ST2Q9H3Q3 398 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 MED9Q9NWA0 146 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 MAT2BQ9NZL9 334 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 ANXA10Q9UJ72 324 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 FBXO5Q9UKT4 447 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 RBMX2Q9Y388 322 aaKnown RBP2.15□□□□□ -2.07
USP48-209ENST00000487880 ZNF706Q9Y5V0 76 aaPredicted RBP2.15□□□□□ -2.07
USP48-209ENST00000487880 CCDC88AQ3V6T2 1871 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 DLEC1Q9Y238 1755 aa2.15□□□□□ -2.07
USP48-209ENST00000487880 PXDNQ92626 1479 aa2.14□□□□□ -2.07
USP48-209ENST00000487880 PKD1L3Q7Z443 1732 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms