RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 DCAF10Q5QP82 559 aa11.3□□□□□ -0.6
USP40-214ENST00000483519 STRADBQ9C0K7 418 aa11.3□□□□□ -0.6
USP40-214ENST00000483519 PRDM14Q9GZV8 571 aa11.3□□□□□ -0.6
USP40-214ENST00000483519 ERRFI1Q9UJM3 462 aaPredicted RBP11.3□□□□□ -0.6
USP40-214ENST00000483519 CHTOPQ9Y3Y2 248 aaKnown RBP11.3□□□□□ -0.6
USP40-214ENST00000483519 CACNA1HO95180 2353 aa11.3□□□□□ -0.6
USP40-214ENST00000483519 KIAA1549Q9HCM3 1950 aa11.3□□□□□ -0.6
USP40-214ENST00000483519 TRIOO75962 3097 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 PF4V1P10720 104 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 AAED1Q7RTV5 226 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 C1QTNF5Q9BXJ0 243 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 SLC25A22Q9H936 323 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 POLR3KQ9Y2Y1 108 aaPredicted RBP11.29□□□□□ -0.6
USP40-214ENST00000483519 ABCA7Q8IZY2 2146 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 TRBV6-6A0A0A6YYG2 114 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 IGKV1D-33P01593 117 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 IGKV1-33P01594 117 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 IGKV1-39P01597 117 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 IGKV1D-39P04432 117 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 CYC1P08574 325 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 RAC3P60763 192 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 C1orf185Q5T7R7 199 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 LINC00596Q86U02 117 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 MKXQ8IYA7 352 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 OR10V1Q8NGI7 309 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 NEIL1Q96FI4 390 aaPredicted RBP11.29□□□□□ -0.6
USP40-214ENST00000483519 IMMP2LQ96T52 175 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 TMEM9BQ9NQ34 198 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 LIN7CQ9NUP9 197 aaKnown RBP11.29□□□□□ -0.6
USP40-214ENST00000483519 EML6Q6ZMW3 1958 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 CEP192Q8TEP8 1941 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 FAM90A26D6RGX4 464 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 DEGS1O15121 323 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 GPM6AP51674 278 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 RPP30P78346 268 aaKnown RBP11.29□□□□□ -0.6
USP40-214ENST00000483519 CEACAM16Q2WEN9 425 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 ZNF468Q5VIY5 522 aaPredicted RBP11.29□□□□□ -0.6
USP40-214ENST00000483519 OR56B2PQ8NGI1 322 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 PSMF1Q92530 271 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 RARRES3Q9UL19 164 aa11.29□□□□□ -0.6
USP40-214ENST00000483519 IGKV1-5P01602 117 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 RPLP1P05386 114 aaKnown RBP11.28□□□□□ -0.6
USP40-214ENST00000483519 CCL3P10147 92 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 PPP1CBP62140 327 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 OR8G2PQ6IF36 304 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 IL36RNQ9UBH0 155 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 TRAPPC1Q9Y5R8 145 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 MARCH11A6NNE9 402 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 HMGB3O15347 200 aaKnown RBP11.28□□□□□ -0.6
USP40-214ENST00000483519 CRYABP02511 175 aaKnown RBP11.28□□□□□ -0.6
USP40-214ENST00000483519 CD99P14209 185 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 IL3RAP26951 378 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 TLE1Q04724 770 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 RIPPLY2Q5TAB7 128 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 ACSM6Q6P461 480 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 ZDHHC23Q8IYP9 409 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 OR10G9Q8NGN4 311 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 OR10G7Q8NGN6 311 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 OR1K1Q8NGR3 316 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 FGFBP3Q8TAT2 258 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 MS4A10Q96PG2 267 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 HS3ST6Q96QI5 342 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 MTCH1Q9NZJ7 389 aa11.28□□□□□ -0.6
USP40-214ENST00000483519 ATP6V1FQ16864 119 aa11.27□□□□□ -0.61
USP40-214ENST00000483519 CEACAM21Q3KPI0 293 aa11.27□□□□□ -0.61
USP40-214ENST00000483519 KIAA2026Q5HYC2 2103 aa11.27□□□□□ -0.61
USP40-214ENST00000483519 FAM78BQ5VT40 261 aa11.27□□□□□ -0.61
USP40-214ENST00000483519 BTNL3Q6UXE8 466 aa11.27□□□□□ -0.61
USP40-214ENST00000483519 TMEM14EPQ6UXP3 125 aa11.27□□□□□ -0.61
USP40-214ENST00000483519 PLSCR4Q9NRQ2 329 aa11.27□□□□□ -0.61
USP40-214ENST00000483519 PILRBQ9UKJ0 227 aa11.27□□□□□ -0.61
USP40-214ENST00000483519 NTF4P34130 210 aa11.27□□□□□ -0.61
USP40-214ENST00000483519 RPL29P47914 159 aaKnown RBP11.27□□□□□ -0.61
USP40-214ENST00000483519 GAGE1Q13065 139 aa11.27□□□□□ -0.61
USP40-214ENST00000483519 PEAR1Q5VY43 1037 aaPredicted RBP11.27□□□□□ -0.61
USP40-214ENST00000483519 C20orf204Q6ZNR8 217 aa11.27□□□□□ -0.61
USP40-214ENST00000483519 ZNF573Q86YE8 665 aa11.27□□□□□ -0.61
USP40-214ENST00000483519 THOC3Q96J01 351 aaKnown RBP11.27□□□□□ -0.61
USP40-214ENST00000483519 VCANP13611 3396 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 ZNF716A6NP11 495 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 ZNF705FA8MVS1 300 aaPredicted RBP11.26□□□□□ -0.61
USP40-214ENST00000483519 NPIPB11E5RHQ5 1161 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 G3V3Y1 287 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 DLEU1O43261 78 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 CBR3O75828 277 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 CLDN1O95832 211 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 ZNF705DP0CH99 300 aaPredicted RBP11.26□□□□□ -0.61
USP40-214ENST00000483519 ZNF705BP0CI00 300 aaPredicted RBP11.26□□□□□ -0.61
USP40-214ENST00000483519 COX5AP20674 150 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 OR3A1P47881 315 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 RPL15P61313 204 aaKnown RBP11.26□□□□□ -0.61
USP40-214ENST00000483519 PRSS8Q16651 343 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 CYB5R2Q6BCY4 276 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 IL1F10Q8WWZ1 152 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 ZCCHC14Q8WYQ9 949 aaKnown RBP11.26□□□□□ -0.61
USP40-214ENST00000483519 WDYHV1Q96HA8 205 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 TMEM147Q9BVK8 224 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 GOLT1BQ9Y3E0 138 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 A0A0U1RQK1 487 aa11.26□□□□□ -0.61
USP40-214ENST00000483519 ZNF320A2RRD8 509 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms