RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, human

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COL7A1-208	ENST00000470076	ASPHD1	Q5U4P2	390 aa		13.58	□□□□□ -0.24
COL7A1-208	ENST00000470076	ZNF660	Q6AZW8	331 aa	Predicted RBP	13.58	□□□□□ -0.24
COL7A1-208	ENST00000470076	ZNF880	Q6PDB4	577 aa		13.58	□□□□□ -0.24
COL7A1-208	ENST00000470076	FAM131A	Q6UXB0	335 aa		13.58	□□□□□ -0.24
COL7A1-208	ENST00000470076	MOB1B	Q7L9L4	216 aa		13.58	□□□□□ -0.24
COL7A1-208	ENST00000470076	OR5B12	Q96R08	314 aa		13.58	□□□□□ -0.24
COL7A1-208	ENST00000470076	TMED9	Q9BVK6	235 aa		13.58	□□□□□ -0.24
COL7A1-208	ENST00000470076	RIMS4	Q9H426	269 aa	Predicted RBP	13.58	□□□□□ -0.24
COL7A1-208	ENST00000470076	CHMP1A	Q9HD42	196 aa	Predicted RBP	13.58	□□□□□ -0.24
COL7A1-208	ENST00000470076	SLC23A1	Q9UHI7	598 aa		13.58	□□□□□ -0.24
COL7A1-208	ENST00000470076	RYR3	Q15413	4870 aa		13.57	□□□□□ -0.24
COL7A1-208	ENST00000470076	OR5H14	A6NHG9	310 aa		13.57	□□□□□ -0.24
COL7A1-208	ENST00000470076	CASQ2	O14958	399 aa	Predicted RBP	13.57	□□□□□ -0.24
COL7A1-208	ENST00000470076	SLC22A1	O15245	554 aa		13.57	□□□□□ -0.24
COL7A1-208	ENST00000470076	ST8SIA5	O15466	376 aa		13.57	□□□□□ -0.24
COL7A1-208	ENST00000470076	CDK1	P06493	297 aa		13.57	□□□□□ -0.24
COL7A1-208	ENST00000470076	CD37	P11049	281 aa		13.57	□□□□□ -0.24
COL7A1-208	ENST00000470076	SRM	P19623	302 aa		13.57	□□□□□ -0.24
COL7A1-208	ENST00000470076	MC5R	P33032	325 aa		13.57	□□□□□ -0.24
COL7A1-208	ENST00000470076	CRIP2	P52943	208 aa	Predicted RBP	13.57	□□□□□ -0.24
COL7A1-208	ENST00000470076	UNC119	Q13432	240 aa		13.57	□□□□□ -0.24
COL7A1-208	ENST00000470076	HSD17B12	Q53GQ0	312 aa		13.57	□□□□□ -0.24
COL7A1-208	ENST00000470076	ZNF429	Q86V71	674 aa		13.57	□□□□□ -0.24
COL7A1-208	ENST00000470076	TCTEX1D1	Q8N7M0	179 aa		13.57	□□□□□ -0.24
COL7A1-208	ENST00000470076	NICN1	Q9BSH3	213 aa		13.57	□□□□□ -0.24
COL7A1-208	ENST00000470076	PLEKHJ1	Q9NW61	149 aa		13.57	□□□□□ -0.24
COL7A1-208	ENST00000470076	TMEM14DP	A8MWL7	114 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	ITGB1BP1	O14713	200 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	RRH	O14718	337 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	OVOL1	O14753	267 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	RBBP9	O75884	186 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	BPNT1	O95861	308 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	CT45A6	P0DMU7	189 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	CT45A5	P0DMU8	189 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	CT45A7	P0DMV0	189 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	QRFP	P83859	136 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	NDP	Q00604	133 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	PLGLA	Q15195	96 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	SPHAR	Q15513	63 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	ECSCR	Q19T08	205 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	C19orf54	Q5BKX5	351 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	CEACAM19	Q7Z692	300 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	OR6M1	Q8NGM8	313 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	SETD6	Q8TBK2	473 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	VCX	Q9H320	206 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	FBXL15	Q9H469	300 aa		13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	FOXA2	Q9Y261	457 aa	Predicted RBP	13.56	□□□□□ -0.24
COL7A1-208	ENST00000470076	TRBV6-6	A0A0A6YYG2	114 aa		13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076		A0A1W2PN81	502 aa		13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	LY86	O95711	162 aa		13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	GSTP1	P09211	210 aa	Known RBP	13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	UCHL1	P09936	223 aa		13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	CHRNA7	P36544	502 aa		13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	CX3CL1	P78423	397 aa		13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	TMEM267	Q0VDI3	215 aa	Predicted RBP	13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	RPL39P5	Q59GN2	51 aa		13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	EDARADD	Q8WWZ3	215 aa		13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	DCUN1D4	Q92564	292 aa		13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	RNF5	Q99942	180 aa		13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	AGMAT	Q9BSE5	352 aa		13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	URM1	Q9BTM9	101 aa	Known RBP	13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	KCNK15	Q9H427	330 aa		13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	ISYNA1	Q9NPH2	558 aa		13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	RNF150	Q9ULK6	438 aa		13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	MGAT4A	Q9UM21	535 aa		13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	LSM2	Q9Y333	95 aa	Known RBP	13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	WASHC3	Q9Y3C0	194 aa		13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	FBXO7	Q9Y3I1	522 aa		13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	SMAD5-AS1	Q9Y6J3	95 aa		13.55	□□□□□ -0.24
COL7A1-208	ENST00000470076	PTGES3L	E9PB15	166 aa		13.54	□□□□□ -0.24
COL7A1-208	ENST00000470076		H0YJW9	148 aa		13.54	□□□□□ -0.24
COL7A1-208	ENST00000470076		H7C2Y5	167 aa		13.54	□□□□□ -0.24
COL7A1-208	ENST00000470076	SOX15	O60248	233 aa		13.54	□□□□□ -0.24
COL7A1-208	ENST00000470076	ZBTB25	P24278	435 aa		13.54	□□□□□ -0.24
COL7A1-208	ENST00000470076	MED22	Q15528	200 aa		13.54	□□□□□ -0.24
COL7A1-208	ENST00000470076	PYHIN1	Q6K0P9	492 aa		13.54	□□□□□ -0.24
COL7A1-208	ENST00000470076	CD200R1L	Q6Q8B3	271 aa		13.54	□□□□□ -0.24
COL7A1-208	ENST00000470076	OR5AN1	Q8NGI8	311 aa		13.54	□□□□□ -0.24
COL7A1-208	ENST00000470076	ABHD14B	Q96IU4	210 aa		13.54	□□□□□ -0.24
COL7A1-208	ENST00000470076	ASCL2	Q99929	193 aa		13.54	□□□□□ -0.24
COL7A1-208	ENST00000470076	TOLLIP	Q9H0E2	274 aa		13.54	□□□□□ -0.24
COL7A1-208	ENST00000470076	PARP12	Q9H0J9	701 aa	Known RBP	13.54	□□□□□ -0.24
COL7A1-208	ENST00000470076	LPAR5	Q9H1C0	372 aa		13.54	□□□□□ -0.24
COL7A1-208	ENST00000470076	SCN3B	Q9NY72	215 aa		13.54	□□□□□ -0.24
COL7A1-208	ENST00000470076	NUBP2	Q9Y5Y2	271 aa		13.54	□□□□□ -0.24
COL7A1-208	ENST00000470076		A0A0A6YYD4	124 aa		13.53	□□□□□ -0.24
COL7A1-208	ENST00000470076	LINC01619	G3V211	115 aa		13.53	□□□□□ -0.24
COL7A1-208	ENST00000470076	LGALS1	P09382	135 aa	Known RBP	13.53	□□□□□ -0.24
COL7A1-208	ENST00000470076	CEACAM6	P40199	344 aa		13.53	□□□□□ -0.24
COL7A1-208	ENST00000470076	HLA-DRB3	P79483	266 aa		13.53	□□□□□ -0.24
COL7A1-208	ENST00000470076	GLDN	Q6ZMI3	551 aa	Predicted RBP	13.53	□□□□□ -0.24
COL7A1-208	ENST00000470076	FAM89B	Q8N5H3	189 aa		13.53	□□□□□ -0.24
COL7A1-208	ENST00000470076	ABHD5	Q8WTS1	349 aa		13.53	□□□□□ -0.24
COL7A1-208	ENST00000470076	DLX4	Q92988	240 aa	Predicted RBP	13.53	□□□□□ -0.24
COL7A1-208	ENST00000470076	ALX4	Q9H161	411 aa	Predicted RBP	13.53	□□□□□ -0.24
COL7A1-208	ENST00000470076	AK3	Q9UIJ7	227 aa		13.53	□□□□□ -0.24
COL7A1-208	ENST00000470076	HSF4	Q9ULV5	492 aa		13.53	□□□□□ -0.24
COL7A1-208	ENST00000470076	A3GALT2	U3KPV4	340 aa		13.53	□□□□□ -0.24
COL7A1-208	ENST00000470076	FCN1	O00602	326 aa		13.52	□□□□□ -0.25
COL7A1-208	ENST00000470076	SOCS1	O15524	211 aa		13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms