RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 MNDAP41218 407 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 MADCAM1Q13477 382 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 LY6EQ16553 131 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 LY6G6FQ5SQ64 297 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 TMEM69Q5SWH9 247 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 TPTE2P1Q5T6R2 138 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 Q6ZS49 121 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 SLC25A48Q6ZT89 311 aaKnown RBP9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 IZUMO1Q8IYV9 350 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 OR10V1Q8NGI7 309 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 OR4A4PQ8NGN8 299 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 OR10X1Q8NGY0 326 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 YPEL2Q96QA6 119 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 AUNIPQ9H7T9 357 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 RSL24D1Q9UHA3 163 aaKnown RBP9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 SLC23A1Q9UHI7 598 aa9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 ZNF230Q9UIE0 474 aaPredicted RBP9.53□□□□□ -0.88
SQSTM1-206ENST00000466342 SMIM31A0A1B0GVY4 71 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 SLC31A2O15432 143 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 SSX5O60225 188 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 DIRAS3O95661 229 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 ZBTB25P24278 435 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 ZNF134P52741 427 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 TAS2R20P59543 309 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 NSUN5P1Q3KNT7 163 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 CT45A1Q5HYN5 189 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 CCDC144NLQ6NUI1 221 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 OR4C13Q8NGP0 309 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 OR2T6Q8NHC8 308 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 CT45A3Q8NHU0 189 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 MAFIPQ8WZ33 124 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 TOMM40LQ969M1 308 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 RPEQ96AT9 228 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 CABLES2Q9BTV7 478 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 ABHD14AQ9BUJ0 271 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 NPFFR1Q9GZQ6 430 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 SLIRPQ9GZT3 109 aaKnown RBP9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 PITPNC1Q9UKF7 332 aa9.52□□□□□ -0.89
SQSTM1-206ENST00000466342 DNAH1Q9P2D7 4330 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 IGKV1D-8A0A087WSZ0 117 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 IGKV1-6A0A0C4DH72 117 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 WI2-2373I1.2A0A1W2PRP0 233 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 FAM25AB3EWG3 89 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 FAM25CB3EWG5 89 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 FAM25GB3EWG6 89 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 RGS5O15539 181 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 HSPA12AO43301 675 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 GSTT2P0CG29 244 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 GSTT2BP0CG30 244 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 PTHLHP12272 177 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 IGLL1P15814 213 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 IL3RAP26951 378 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 DYNLT3P51808 116 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 ARHGDIBP52566 201 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 ZNF137PP52743 207 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 ZNF816Q0VGE8 651 aaPredicted RBP9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 PLA1AQ53H76 456 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 LYG1Q8N1E2 194 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 WFDC9Q8NEX5 89 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 OR2AK2Q8NG84 335 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 OR4F17Q8NGA8 305 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 R3HDM4Q96D70 268 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 OR4F4Q96R69 305 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 ST6GALNAC5Q9BVH7 336 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 MIXL1Q9H2W2 232 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 ABCB10Q9NRK6 738 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 NDUFA13Q9P0J0 144 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 OR1A1Q9P1Q5 309 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 SIGLEC9Q9Y336 463 aa9.51□□□□□ -0.89
SQSTM1-206ENST00000466342 LYSTQ99698 3801 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 A0A1W2PPI3 338 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 ITGB1BP1O14713 200 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 HSD17B6O14756 317 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 HLA-DQB1P01920 261 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 CEACAM6P40199 344 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 CBX5P45973 191 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 RAB7AP51149 207 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 DIAPH2-AS1Q14236 149 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 IGSF11Q5DX21 431 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 LAX1Q8IWV1 398 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 OR8H3Q8N146 312 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 KLHDC1Q8N7A1 406 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 EDARADDQ8WWZ3 215 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 ST6GALNAC6Q969X2 333 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 TOLLIPQ9H0E2 274 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 EXTL2Q9UBQ6 330 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 ADAM30Q9UKF2 790 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 TCF19Q9Y242 345 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 U3KQK5 164 aa9.5□□□□□ -0.89
SQSTM1-206ENST00000466342 TRBV6-7A0A0A0MS04 114 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 DPPA5A6NC42 116 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 A6NDX4 124 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 CTDSP2O14595 271 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 BET1O15155 118 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 CHST1O43916 411 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 GAPDHP04406 335 aaKnown RBP9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 LPLP06858 475 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 CTXN2P0C2S0 81 aa9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 NHLRC4P0CG21 123 aaPredicted RBP9.49□□□□□ -0.89
SQSTM1-206ENST00000466342 CD33P20138 364 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms