RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 VAMP1P23763 118 aa9.73□□□□□ -0.85
USP54-209ENST00000464635 H2BFSP57053 126 aa9.73□□□□□ -0.85
USP54-209ENST00000464635 TMEM187Q14656 261 aa9.73□□□□□ -0.85
USP54-209ENST00000464635 GSG1LQ6UXU4 331 aa9.73□□□□□ -0.85
USP54-209ENST00000464635 LGI3Q8N145 548 aa9.73□□□□□ -0.85
USP54-209ENST00000464635 OR2T35Q8NGX2 323 aa9.73□□□□□ -0.85
USP54-209ENST00000464635 TMEM56Q96MV1 263 aa9.73□□□□□ -0.85
USP54-209ENST00000464635 SLC5A7Q9GZV3 580 aa9.73□□□□□ -0.85
USP54-209ENST00000464635 TMED3Q9Y3Q3 217 aa9.73□□□□□ -0.85
USP54-209ENST00000464635 TMEM56-RWDD3S4R434 201 aa9.73□□□□□ -0.85
USP54-209ENST00000464635 IGHV3-64DA0A0J9YX35 117 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 hADV38S2A0JD32 116 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 HSPA12AO43301 675 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 RP2O75695 350 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 CYB5R3P00387 301 aaPredicted RBP9.72□□□□□ -0.85
USP54-209ENST00000464635 IFNA21P01568 189 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 RPA2P15927 270 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 GLIPR1P48060 266 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 CEBPDP49716 269 aaPredicted RBP9.72□□□□□ -0.85
USP54-209ENST00000464635 IL15RAQ13261 267 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 LIAT1Q6ZQX7 453 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 LINC01356Q8N9X3 169 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 UXS1Q8NBZ7 420 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 CLDND2Q8NHS1 167 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 GLYATL2Q8WU03 294 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 TMEM158Q8WZ71 300 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 TOMM40LQ969M1 308 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 GON7Q9BXV9 100 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 TMEM222Q9H0R3 208 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 RDH8Q9NYR8 311 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 METRNQ9UJH8 293 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 LINC00312Q9Y6C7 94 aa9.72□□□□□ -0.85
USP54-209ENST00000464635 TRGV10A0A0A0MS01 117 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 C3orf85A0A1B0GTC6 90 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 KBTBD11-OT1A0A1B0GTJ5 212 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 FAM157AC9JC47 383 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 C3orf80F5H4A9 247 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 G3V3Q6 166 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 H0Y980 276 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 GOSR2O14653 212 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 CDS2O95674 445 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 SLC25A6P12236 298 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 F2RP25116 425 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 UCP1P25874 307 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 CD80P33681 288 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 CEACAM6P40199 344 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 GPR6P46095 362 aaPredicted RBP9.71□□□□□ -0.86
USP54-209ENST00000464635 RAB7AP51149 207 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 TMEM33P57088 247 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 FXYD4P59646 89 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 BAMBIQ13145 260 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 ANKRD55Q3KP44 614 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 TMEM155Q4W5P6 130 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 LRRC10Q5BKY1 277 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 ZNF645Q8N7E2 425 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 C8orf31Q8N9H6 132 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 ZNRF1Q8ND25 227 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 OR13A1Q8NGR1 328 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 ARL11Q969Q4 196 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 C1orf159Q96HA4 380 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 C2orf50Q96LR7 162 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 LPAR2Q9HBW0 351 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 COMMD9Q9P000 198 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 CLN8Q9UBY8 286 aa9.71□□□□□ -0.86
USP54-209ENST00000464635 SVEP1Q4LDE5 3571 aa9.7□□□□□ -0.86
USP54-209ENST00000464635 TRBV23-1A0A0A0MS06 115 aa9.7□□□□□ -0.86
USP54-209ENST00000464635 PGLYRP1O75594 196 aaPredicted RBP9.7□□□□□ -0.86
USP54-209ENST00000464635 PET100P0DJ07 73 aa9.7□□□□□ -0.86
USP54-209ENST00000464635 LYL1P12980 280 aa9.7□□□□□ -0.86
USP54-209ENST00000464635 HNF1AP20823 631 aa9.7□□□□□ -0.86
USP54-209ENST00000464635 C2orf68Q2NKX9 166 aa9.7□□□□□ -0.86
USP54-209ENST00000464635 AVPI1Q5T686 147 aa9.7□□□□□ -0.86
USP54-209ENST00000464635 ZNF66Q6ZN08 573 aa9.7□□□□□ -0.86
USP54-209ENST00000464635 ZNF818PQ6ZRF7 136 aa9.7□□□□□ -0.86
USP54-209ENST00000464635 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.7□□□□□ -0.86
USP54-209ENST00000464635 MRGPRDQ8TDS7 321 aa9.7□□□□□ -0.86
USP54-209ENST00000464635 CASTOR1Q8WTX7 329 aa9.7□□□□□ -0.86
USP54-209ENST00000464635 SECTM1Q8WVN6 248 aa9.7□□□□□ -0.86
USP54-209ENST00000464635 IL1F10Q8WWZ1 152 aa9.7□□□□□ -0.86
USP54-209ENST00000464635 CCL17Q92583 94 aa9.7□□□□□ -0.86
USP54-209ENST00000464635 RAB39BQ96DA2 213 aa9.7□□□□□ -0.86
USP54-209ENST00000464635 ABHD14BQ96IU4 210 aa9.7□□□□□ -0.86
USP54-209ENST00000464635 AGMATQ9BSE5 352 aa9.7□□□□□ -0.86
USP54-209ENST00000464635 IGHV3OR15-7A0A075B7D8 119 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 IGKV1D-13A0A0B4J2D9 117 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 RGS13O14921 159 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 PPIHO43447 177 aaKnown RBP9.69□□□□□ -0.86
USP54-209ENST00000464635 NDUFB3O43676 98 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 IGLV2-14P01704 120 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 GYPAP02724 150 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 OR5AC1P0C628 307 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 IGKV1-13P0DP09 117 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 PI3P19957 117 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 ARHGDIBP52566 201 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 DVL1P1P54792 670 aaPredicted RBP9.69□□□□□ -0.86
USP54-209ENST00000464635 LOXL3P58215 753 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 EIF4EBP1Q13541 118 aaPredicted RBP9.69□□□□□ -0.86
USP54-209ENST00000464635 ZNF345Q14585 488 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 MORN2Q502X0 79 aa9.69□□□□□ -0.86
USP54-209ENST00000464635 TBC1D26Q86UD7 250 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms