RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 CD82P27701 267 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 PPP1CBP62140 327 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 SLC25A53Q5H9E4 307 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 CENPVQ7Z7K6 275 aaPredicted RBP9.93□□□□□ -0.82
CPSF3-202ENST00000460593 ABHD14BQ96IU4 210 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 ZDHHC11Q9H8X9 412 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 IGHV1OR21-1A0A087WYE8 117 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 GDF9O60383 454 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 RAB7AP51149 207 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 OR8B8Q15620 311 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 CARFQ8N187 725 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 WDYHV1Q96HA8 205 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 PSMG3Q9BT73 122 aaPredicted RBP9.93□□□□□ -0.82
CPSF3-202ENST00000460593 ATP23Q9Y6H3 246 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 PXMP4Q9Y6I8 212 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 TRAV38-1A0A0B4J264 116 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 AQP7O14520 342 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 WNT2P09544 360 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 GNB1P62873 340 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 HBG1P69891 147 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 HBG2P69892 147 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 SERF2P84101 59 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 KCNIP4Q6PIL6 250 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 Q6ZSR3 168 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 ERASQ7Z444 233 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 LINC01551Q86U37 167 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 ZNF709Q8N972 641 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 OR56B2PQ8NGI1 322 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 C10orf35Q96D05 121 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 OR51B6Q9H340 312 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 MTCH1Q9NZJ7 389 aa9.93□□□□□ -0.82
CPSF3-202ENST00000460593 A0A0J9YW62 118 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 DUXBA0A1W2PPF3 345 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 SIRPB1O00241 398 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 SLC17A3O00476 420 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 YPEL1O60688 119 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 CHRNB4P30926 498 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 KRTDAPP60985 99 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 FAM27BQ5VT28 67 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 TMEM42Q69YG0 159 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 STPG4Q8N801 248 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 OR1L1Q8NH94 360 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 NEIL1Q96FI4 390 aaPredicted RBP9.92□□□□□ -0.82
CPSF3-202ENST00000460593 YPEL2Q96QA6 119 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 VAMP8Q9BV40 100 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 ZNF703Q9H7S9 590 aaPredicted RBP9.92□□□□□ -0.82
CPSF3-202ENST00000460593 FSCN3Q9NQT6 498 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 SH2D1BO14796 132 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 TNFSF13O75888 250 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 ZDHHC16Q969W1 377 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 ANAPC16Q96DE5 110 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 TUBG2Q9NRH3 451 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 RNF150Q9ULK6 438 aa9.92□□□□□ -0.82
CPSF3-202ENST00000460593 COL5A1P20908 1838 aaPredicted RBP9.92□□□□□ -0.82
CPSF3-202ENST00000460593 TYMSP04818 313 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 GAGE1Q13065 139 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 TIPARPQ7Z3E1 657 aaKnown RBP9.91□□□□□ -0.82
CPSF3-202ENST00000460593 ATOH7Q8N100 152 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 WNT5BQ9H1J7 359 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 TRBV20OR9-2A0A075B6H5 130 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 TMEM250H0YL14 139 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 IGLV2-14P01704 120 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 UMODP07911 640 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 MSX1P28360 303 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 SRP14P37108 136 aaKnown RBP9.91□□□□□ -0.82
CPSF3-202ENST00000460593 LINC00205P59089 165 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 ZNF585BQ52M93 769 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 ZNF324BQ6AW86 544 aaPredicted RBP9.91□□□□□ -0.82
CPSF3-202ENST00000460593 ETFRF1Q6IPR1 90 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 CLDN23Q96B33 292 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 SPACA9Q96E40 222 aaPredicted RBP9.91□□□□□ -0.82
CPSF3-202ENST00000460593 OR6C1Q96RD1 312 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 REPIN1Q9BWE0 567 aaKnown RBP9.91□□□□□ -0.82
CPSF3-202ENST00000460593 TMEM9BQ9NQ34 198 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 RYDENQ9NUL5 291 aaKnown RBP9.91□□□□□ -0.82
CPSF3-202ENST00000460593 OR2W1Q9Y3N9 320 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 GTF3C1Q12789 2109 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 M0QZK8 103 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 KRASP01116 189 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 LINC00614P0C842 121 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 CCL3P10147 92 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 VEGFBP49765 207 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 CEACAM16Q2WEN9 425 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 KIAA1644Q3SXP7 199 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 RHBDD2Q6NTF9 364 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 KMT5CQ86Y97 462 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 PINX1Q96BK5 328 aaKnown RBP9.91□□□□□ -0.82
CPSF3-202ENST00000460593 BTF3L4Q96K17 158 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 SAMD10Q9BYL1 202 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 DEFB126Q9BYW3 111 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 UBE2ZQ9H832 354 aaPredicted RBP9.91□□□□□ -0.82
CPSF3-202ENST00000460593 ELOVL5Q9NYP7 299 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 FBXL7Q9UJT9 491 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 MMP17Q9ULZ9 603 aa9.91□□□□□ -0.82
CPSF3-202ENST00000460593 A0A096LPE4 126 aa9.9□□□□□ -0.82
CPSF3-202ENST00000460593 CTXND1A0A1B0GTU2 59 aa9.9□□□□□ -0.82
CPSF3-202ENST00000460593 LOC102725191A0A1B0GVB3 256 aa9.9□□□□□ -0.82
CPSF3-202ENST00000460593 A0A1W2PPZ6 126 aa9.9□□□□□ -0.82
CPSF3-202ENST00000460593 ZNF816Q0VGE8 651 aaPredicted RBP9.9□□□□□ -0.82
CPSF3-202ENST00000460593 MCEMP1Q8IX19 187 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms