RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ZNF250P15622 560 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 HSD52Q0P140 79 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 EDDM3AQ14507 147 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 ZNF260Q3ZCT1 412 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 WIPI1Q5MNZ9 446 aaPredicted RBP6.3□□□□□ -1.4
VPS53-204ENST00000437048 OR10D3Q8NH80 312 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 ABHD3Q8WU67 409 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 NXT2Q9NPJ8 142 aaKnown RBP6.3□□□□□ -1.4
VPS53-204ENST00000437048 TNCP24821 2201 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 MOSPD3O75425 235 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 LGALS3P17931 250 aaKnown RBP6.3□□□□□ -1.4
VPS53-204ENST00000437048 PTGDSP41222 190 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 SPNS3Q6ZMD2 512 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 C10orf111Q8N326 155 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 LY96Q9Y6Y9 160 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 ARID2Q68CP9 1835 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 TRAV17A0A0B4J275 112 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 GNG7O60262 68 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 RNFT1Q5M7Z0 435 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 LINC01465Q8N7H1 131 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 CACNG8Q8WXS5 425 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 NUDT11Q96G61 164 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 MRPL16Q9NX20 251 aaKnown RBP6.3□□□□□ -1.4
VPS53-204ENST00000437048 LINC01553A4QN01 128 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 RPL36A-HNRNPH2H7BZ11 118 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 YRDCQ86U90 279 aaKnown RBP6.3□□□□□ -1.4
VPS53-204ENST00000437048 MMD2Q8IY49 270 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 FOXB1Q99853 325 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 LAMTOR2Q9Y2Q5 125 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 GAGE1Q13065 139 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 MESTQ5EB52 335 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 ZFAND6Q6FIF0 208 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 PSG5Q15238 335 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 CLLU1OSQ5K130 101 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 OR8I2Q8N0Y5 310 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 ZNF257Q9Y2Q1 563 aa6.3□□□□□ -1.4
VPS53-204ENST00000437048 LOC107984156A0A0G2JMH3 177 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 SFTPCP11686 197 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 CCL5P13501 91 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 ARL17AQ8IVW1 177 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 COA4Q9NYJ1 87 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 SCCPDHQ8NBX0 429 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 R3HDMLQ9H3Y0 253 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 HEXA-AS1Q9H8Q6 139 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 H3BVH4 76 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 PLPP3O14495 311 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 TMEM108Q6UXF1 575 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 HIGD1AQ9Y241 93 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 SBF2Q86WG5 1849 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 CLDN14O95500 239 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 HINT1P49773 126 aaPredicted RBP6.29□□□□□ -1.4
VPS53-204ENST00000437048 CNRIP1Q96F85 164 aaPredicted RBP6.29□□□□□ -1.4
VPS53-204ENST00000437048 PGLYRP3Q96LB9 341 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 SDHCQ99643 169 aaPredicted RBP6.29□□□□□ -1.4
VPS53-204ENST00000437048 PARLQ9H300 379 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 WDR54Q9H977 334 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 TMEM78Q5T7P6 136 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 OR2K2Q8NGT1 345 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 ATP23Q9Y6H3 246 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 LRRK1Q38SD2 2015 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 K7EQS6 105 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 K7ESF4 209 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 HYAL3O43820 417 aaPredicted RBP6.29□□□□□ -1.4
VPS53-204ENST00000437048 TMEM50BP56557 158 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 H1FXQ92522 213 aaKnown RBP6.29□□□□□ -1.4
VPS53-204ENST00000437048 FLYWCH2Q96CP2 140 aaKnown RBP6.29□□□□□ -1.4
VPS53-204ENST00000437048 FFAR1O14842 300 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 SLC35E4Q6ICL7 350 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 INO80CQ6PI98 192 aaPredicted RBP6.29□□□□□ -1.4
VPS53-204ENST00000437048 FMC1Q96HJ9 113 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 LANCL2Q9NS86 450 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 TRAV9-2A0A087WT02 112 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 PLNP26678 52 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 RAB1CQ92928 201 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 DNAJC4Q9NNZ3 241 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 MRM2Q9UI43 246 aaKnown RBP6.29□□□□□ -1.4
VPS53-204ENST00000437048 BTAF1O14981 1849 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 H3BP45 60 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 CDIPTO14735 213 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 TMEM50AO95807 157 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 OR10AC1Q8NH08 325 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 GNRHR2Q96P88 292 aa6.29□□□□□ -1.4
VPS53-204ENST00000437048 GRPP07492 148 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 NUBP1P53384 320 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 APCDD1LQ8NCL9 501 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 TAF15Q92804 592 aaKnown RBP eCLIP6.28□□□□□ -1.4
VPS53-204ENST00000437048 FAM234AQ9H0X4 552 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 ORMDL2Q53FV1 153 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 ANKRD33Q7Z3H0 272 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 RGP1Q92546 391 aaPredicted RBP6.28□□□□□ -1.4
VPS53-204ENST00000437048 ASCL3Q9NQ33 180 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 C8orf88P0DMB2 117 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 C2orf68Q2NKX9 166 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 LPAR2Q9HBW0 351 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 TRBV20-1A0A075B6N2 111 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 HSPB6O14558 160 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 SBK3P0C264 359 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 SPANXN1Q5VSR9 72 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 FAM27BQ5VT28 67 aa6.28□□□□□ -1.4
VPS53-204ENST00000437048 C6orf15Q6UXA7 325 aaPredicted RBP6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms