RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 IGHV3-43A0A0B4J1X8 118 aa16.77■□□□□ 0.28
USP39-204ENST00000409766 IGHV1-46P01743 117 aa16.77■□□□□ 0.28
USP39-204ENST00000409766 ADH4P08319 380 aa16.77■□□□□ 0.28
USP39-204ENST00000409766 IGHV3-43DP0DP04 118 aa16.77■□□□□ 0.28
USP39-204ENST00000409766 ADCYAP1P18509 176 aa16.77■□□□□ 0.28
USP39-204ENST00000409766 GZMHP20718 246 aa16.77■□□□□ 0.28
USP39-204ENST00000409766 ID4P47928 161 aa16.77■□□□□ 0.28
USP39-204ENST00000409766 ARHGDIBP52566 201 aa16.77■□□□□ 0.28
USP39-204ENST00000409766 FGFRL1Q8N441 504 aa16.77■□□□□ 0.28
USP39-204ENST00000409766 ZNF808Q8N4W9 903 aaPredicted RBP16.77■□□□□ 0.28
USP39-204ENST00000409766 ZNRF1Q8ND25 227 aa16.77■□□□□ 0.28
USP39-204ENST00000409766 GCM1Q9NP62 436 aa16.77■□□□□ 0.28
USP39-204ENST00000409766 K7N7A8 449 aa16.77■□□□□ 0.27
USP39-204ENST00000409766 DLL1O00548 723 aa16.77■□□□□ 0.27
USP39-204ENST00000409766 RAMP3O60896 148 aa16.77■□□□□ 0.27
USP39-204ENST00000409766 ATG12O94817 140 aa16.77■□□□□ 0.27
USP39-204ENST00000409766 DYNLT3P51808 116 aa16.77■□□□□ 0.27
USP39-204ENST00000409766 DEFA5Q01523 94 aa16.77■□□□□ 0.27
USP39-204ENST00000409766 AGMATQ9BSE5 352 aa16.77■□□□□ 0.27
USP39-204ENST00000409766 CACFD1Q9UGQ2 172 aa16.77■□□□□ 0.27
USP39-204ENST00000409766 DSCAMO60469 2012 aa16.77■□□□□ 0.27
USP39-204ENST00000409766 PTAFRP25105 342 aa16.76■□□□□ 0.27
USP39-204ENST00000409766 RAB5CP51148 216 aa16.76■□□□□ 0.27
USP39-204ENST00000409766 TNFAIP6P98066 277 aaPredicted RBP16.76■□□□□ 0.27
USP39-204ENST00000409766 C10orf91Q5T1B1 145 aa16.76■□□□□ 0.27
USP39-204ENST00000409766 FAM222BQ8WU58 562 aa16.76■□□□□ 0.27
USP39-204ENST00000409766 TMEM231Q9H6L2 316 aa16.76■□□□□ 0.27
USP39-204ENST00000409766 UQCC1Q9NVA1 299 aa16.76■□□□□ 0.27
USP39-204ENST00000409766 WSB1Q9Y6I7 421 aa16.76■□□□□ 0.27
USP39-204ENST00000409766 DIDO1Q9BTC0 2240 aaKnown RBP16.76■□□□□ 0.27
USP39-204ENST00000409766 TXNL1O43396 289 aa16.75■□□□□ 0.27
USP39-204ENST00000409766 SYNGR2O43760 224 aa16.75■□□□□ 0.27
USP39-204ENST00000409766 FAM87AP0C7U9 286 aa16.75■□□□□ 0.27
USP39-204ENST00000409766 MUC1P15941 1255 aaPredicted RBP16.75■□□□□ 0.27
USP39-204ENST00000409766 BRWD1-AS2P59051 145 aa16.75■□□□□ 0.27
USP39-204ENST00000409766 RPL23AP62750 156 aaKnown RBP16.75■□□□□ 0.27
USP39-204ENST00000409766 CATR1Q13166 79 aa16.75■□□□□ 0.27
USP39-204ENST00000409766 FAM201AQ5SY85 155 aa16.75■□□□□ 0.27
USP39-204ENST00000409766 TMEM217Q8N7C4 229 aa16.75■□□□□ 0.27
USP39-204ENST00000409766 TREM1Q9NP99 234 aa16.75■□□□□ 0.27
USP39-204ENST00000409766 FAM96BQ9Y3D0 163 aa16.75■□□□□ 0.27
USP39-204ENST00000409766 MMP24Q9Y5R2 645 aa16.75■□□□□ 0.27
USP39-204ENST00000409766 PCNX1Q96RV3 2341 aa16.75■□□□□ 0.27
USP39-204ENST00000409766 DPRXA6NFQ7 191 aa16.75■□□□□ 0.27
USP39-204ENST00000409766 DEFB108AA8MXU0 73 aa16.75■□□□□ 0.27
USP39-204ENST00000409766 THBDP07204 575 aa16.75■□□□□ 0.27
USP39-204ENST00000409766 FHITP49789 147 aa16.75■□□□□ 0.27
USP39-204ENST00000409766 WFDC8Q8IUA0 241 aa16.75■□□□□ 0.27
USP39-204ENST00000409766 SPAG16Q8N0X2 631 aa16.75■□□□□ 0.27
USP39-204ENST00000409766 TSNAXQ99598 290 aaKnown RBP16.75■□□□□ 0.27
USP39-204ENST00000409766 COA4Q9NYJ1 87 aa16.75■□□□□ 0.27
USP39-204ENST00000409766 RNF7Q9UBF6 113 aa16.75■□□□□ 0.27
USP39-204ENST00000409766 P0C879 139 aa16.74■□□□□ 0.27
USP39-204ENST00000409766 ATP6V0CP27449 155 aa16.74■□□□□ 0.27
USP39-204ENST00000409766 BTNL3Q6UXE8 466 aa16.74■□□□□ 0.27
USP39-204ENST00000409766 PSG11Q9UQ72 335 aa16.74■□□□□ 0.27
USP39-204ENST00000409766 STRAPQ9Y3F4 350 aaKnown RBP16.74■□□□□ 0.27
USP39-204ENST00000409766 H3BP45 60 aa16.74■□□□□ 0.27
USP39-204ENST00000409766 AGPAT2O15120 278 aa16.74■□□□□ 0.27
USP39-204ENST00000409766 ST8SIA5O15466 376 aa16.74■□□□□ 0.27
USP39-204ENST00000409766 C1QL1O75973 258 aa16.74■□□□□ 0.27
USP39-204ENST00000409766 CD5P06127 495 aa16.74■□□□□ 0.27
USP39-204ENST00000409766 CD80P33681 288 aa16.74■□□□□ 0.27
USP39-204ENST00000409766 SULT1A1P50225 295 aa16.74■□□□□ 0.27
USP39-204ENST00000409766 OR2B11Q5JQS5 317 aa16.74■□□□□ 0.27
USP39-204ENST00000409766 TCTEX1D1Q8N7M0 179 aa16.74■□□□□ 0.27
USP39-204ENST00000409766 CARHSP1Q9Y2V2 147 aaKnown RBP16.74■□□□□ 0.27
USP39-204ENST00000409766 C17orf98A8MV24 154 aa16.73■□□□□ 0.27
USP39-204ENST00000409766 CLDN1O95832 211 aa16.73■□□□□ 0.27
USP39-204ENST00000409766 TNFSF4P23510 183 aa16.73■□□□□ 0.27
USP39-204ENST00000409766 CAMLGP49069 296 aa16.73■□□□□ 0.27
USP39-204ENST00000409766 ZNF66Q6ZN08 573 aa16.73■□□□□ 0.27
USP39-204ENST00000409766 STX12Q86Y82 276 aa16.73■□□□□ 0.27
USP39-204ENST00000409766 ZNF561Q8N587 486 aa16.73■□□□□ 0.27
USP39-204ENST00000409766 Q8TCH9 128 aa16.73■□□□□ 0.27
USP39-204ENST00000409766 TCTEX1D2Q8WW35 142 aa16.73■□□□□ 0.27
USP39-204ENST00000409766 EDARADDQ8WWZ3 215 aa16.73■□□□□ 0.27
USP39-204ENST00000409766 JPT1Q9UK76 154 aa16.73■□□□□ 0.27
USP39-204ENST00000409766 RFNGQ9Y644 331 aa16.73■□□□□ 0.27
USP39-204ENST00000409766 TLN1Q9Y490 2541 aaKnown RBP16.73■□□□□ 0.27
USP39-204ENST00000409766 F8W036 122 aa16.72■□□□□ 0.27
USP39-204ENST00000409766 RNASEK-C17orf49H0YIS7 233 aa16.72■□□□□ 0.27
USP39-204ENST00000409766 TOR1AO14656 332 aa16.72■□□□□ 0.27
USP39-204ENST00000409766 ZNF616Q08AN1 781 aa16.72■□□□□ 0.27
USP39-204ENST00000409766 ZNF816Q0VGE8 651 aaPredicted RBP16.72■□□□□ 0.27
USP39-204ENST00000409766 LTC4SQ16873 150 aa16.72■□□□□ 0.27
USP39-204ENST00000409766 MORN2Q502X0 79 aa16.72■□□□□ 0.27
USP39-204ENST00000409766 MIDNQ504T8 468 aa16.72■□□□□ 0.27
USP39-204ENST00000409766 TMEM182Q6ZP80 229 aaPredicted RBP16.72■□□□□ 0.27
USP39-204ENST00000409766 SDSLQ96GA7 329 aa16.72■□□□□ 0.27
USP39-204ENST00000409766 HSD17B10Q99714 261 aaKnown RBP16.72■□□□□ 0.27
USP39-204ENST00000409766 ATP5SQ99766 215 aa16.72■□□□□ 0.27
USP39-204ENST00000409766 NCOR1P1Q9H4R4 102 aa16.72■□□□□ 0.27
USP39-204ENST00000409766 C19orf12Q9NSK7 152 aa16.72■□□□□ 0.27
USP39-204ENST00000409766 DSCAML1Q8TD84 2053 aa16.72■□□□□ 0.27
USP39-204ENST00000409766 LINC00473A8K010 186 aa16.72■□□□□ 0.27
USP39-204ENST00000409766 FAM90A26D6RGX4 464 aa16.72■□□□□ 0.27
USP39-204ENST00000409766 TRIM77I1YAP6 450 aa16.72■□□□□ 0.27
USP39-204ENST00000409766 F2RL2O00254 374 aa16.72■□□□□ 0.27
USP39-204ENST00000409766 S1PR2O95136 353 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms