RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 WBP1Q96G27 269 aa10.31□□□□□ -0.76
HMGB1-206ENST00000405805 TUBA4BQ9H853 241 aa10.31□□□□□ -0.76
HMGB1-206ENST00000405805 TICRRQ7Z2Z1 1910 aa10.31□□□□□ -0.76
HMGB1-206ENST00000405805 EYSQ5T1H1 3165 aa10.31□□□□□ -0.76
HMGB1-206ENST00000405805 FGF16O43320 207 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 FAM157CP0CG43 387 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 RAC2P15153 192 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 BCL3P20749 454 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 FBLN7Q53RD9 439 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 MAFAQ8NHW3 353 aaPredicted RBP10.3□□□□□ -0.76
HMGB1-206ENST00000405805 CHRDL1Q9BU40 450 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 ZNF665Q9H7R5 613 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 MYOZ1Q9NP98 299 aaPredicted RBP10.3□□□□□ -0.76
HMGB1-206ENST00000405805 NCOA6Q14686 2063 aaPredicted RBP10.3□□□□□ -0.76
HMGB1-206ENST00000405805 CXCL1P09341 107 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 TCL1AP56279 114 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 C19orf35Q6ZS72 473 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 TMEM252Q8N6L7 170 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 CNEP1R1Q8N9A8 125 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 KCNIP1Q9NZI2 227 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 ZNF106Q9H2Y7 1883 aaKnown RBP10.3□□□□□ -0.76
HMGB1-206ENST00000405805 CA6P23280 308 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 CEACAM8P31997 349 aaPredicted RBP10.3□□□□□ -0.76
HMGB1-206ENST00000405805 CYB561P49447 251 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 FUT6P51993 359 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 RND3P61587 244 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 ARG2P78540 354 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 SPINK14Q6IE38 97 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 GALNT14Q96FL9 552 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 GPR27Q9NS67 375 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 IL36RNQ9UBH0 155 aa10.3□□□□□ -0.76
HMGB1-206ENST00000405805 CHD3Q12873 2000 aaKnown RBP10.3□□□□□ -0.76
HMGB1-206ENST00000405805 CRYM-AS1A6NIL9 109 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 AMBPP02760 352 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 UCP2P55851 309 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 LYZL4Q96KX0 146 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 PARLQ9H300 379 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 DEFB108AA8MXU0 73 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 SRPXP78539 464 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 FAM3AP98173 230 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 PRDX4Q13162 271 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 PDLIM3Q53GG5 364 aaPredicted RBP10.29□□□□□ -0.76
HMGB1-206ENST00000405805 WIPI2Q9Y4P8 454 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 PCDH15Q96QU1 1955 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 SEC11BP0C7V7 166 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 SLC35B1P78383 322 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 SEBOXQ9HB31 216 aaPredicted RBP10.29□□□□□ -0.76
HMGB1-206ENST00000405805 WFDC1Q9HC57 220 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 LOC102723971A0A1B0GUV8 181 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 F8VVB4 439 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 F8VWA3 439 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 EPHA8P29322 1005 aaPredicted RBP10.29□□□□□ -0.76
HMGB1-206ENST00000405805 DSCR4P56555 118 aaPredicted RBP10.29□□□□□ -0.76
HMGB1-206ENST00000405805 HBG1P69891 147 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 HBG2P69892 147 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 PSG4Q00888 419 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 RAB31Q13636 194 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 IL13RA2Q14627 380 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 WFDC8Q8IUA0 241 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 SMIM8Q96KF7 97 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 DEFB127Q9H1M4 99 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 ABI3Q9P2A4 366 aa10.29□□□□□ -0.76
HMGB1-206ENST00000405805 KIR2DS1A0A191URI9 304 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 KIR2DS4P43632 304 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 UBE2NP61088 152 aaKnown RBP10.28□□□□□ -0.76
HMGB1-206ENST00000405805 KIR2DS1Q14954 304 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 RAB35Q15286 201 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 HIST3H3Q16695 136 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 DHRS13Q6UX07 377 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 ADGRG7Q96K78 797 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 CLEC18AA5D8T8 446 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 GOSR1O95249 250 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 MST1LQ2TV78 715 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 HEPN1Q6WQI6 88 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 CLEC18CQ8NCF0 446 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 OR2Y1Q8NGV0 311 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 CDH20Q9HBT6 801 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 LAMTOR2Q9Y2Q5 125 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 USP34Q70CQ2 3546 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 DUXBA0A1W2PPF3 345 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 PNRC1Q12796 327 aaPredicted RBP10.28□□□□□ -0.76
HMGB1-206ENST00000405805 CALHM1Q8IU99 346 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 OR52L2PQ8NGH6 319 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 RNASE8Q8TDE3 154 aaKnown RBP10.28□□□□□ -0.76
HMGB1-206ENST00000405805 MIEN1Q9BRT3 115 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 MRPL13Q9BYD1 178 aaKnown RBP10.28□□□□□ -0.76
HMGB1-206ENST00000405805 PRDM13Q9H4Q3 707 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 B4GALT7Q9UBV7 327 aa10.28□□□□□ -0.76
HMGB1-206ENST00000405805 IGHV3-43A0A0B4J1X8 118 aa10.27□□□□□ -0.76
HMGB1-206ENST00000405805 IGHV5-10-1A0A0J9YXX1 117 aa10.27□□□□□ -0.76
HMGB1-206ENST00000405805 A0A1W2PQM1 296 aa10.27□□□□□ -0.76
HMGB1-206ENST00000405805 ZNF737O75373 536 aa10.27□□□□□ -0.76
HMGB1-206ENST00000405805 DANCRP0C864 163 aa10.27□□□□□ -0.76
HMGB1-206ENST00000405805 IGHV3-43DP0DP04 118 aa10.27□□□□□ -0.76
HMGB1-206ENST00000405805 FOLR2P14207 255 aa10.27□□□□□ -0.76
HMGB1-206ENST00000405805 P2RY6Q15077 328 aa10.27□□□□□ -0.76
HMGB1-206ENST00000405805 WDR73Q6P4I2 378 aa10.27□□□□□ -0.76
HMGB1-206ENST00000405805 ZDHHC23Q8IYP9 409 aa10.27□□□□□ -0.76
HMGB1-206ENST00000405805 OR5R1Q8NH85 324 aa10.27□□□□□ -0.76
HMGB1-206ENST00000405805 RCC1LQ96I51 464 aaKnown RBP10.27□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms