RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 OR4D5Q8NGN0 318 aa9.33□□□□□ -0.92
TCOF1-203ENST00000394269 FLNCQ14315 2725 aa9.33□□□□□ -0.92
TCOF1-203ENST00000394269 OOEPA6NGQ2 149 aa9.33□□□□□ -0.92
TCOF1-203ENST00000394269 FAM157CP0CG43 387 aa9.33□□□□□ -0.92
TCOF1-203ENST00000394269 CAMLGP49069 296 aa9.33□□□□□ -0.92
TCOF1-203ENST00000394269 Q3ZCU0 254 aa9.33□□□□□ -0.92
TCOF1-203ENST00000394269 MOB1BQ7L9L4 216 aa9.33□□□□□ -0.92
TCOF1-203ENST00000394269 LRRC46Q96FV0 321 aa9.33□□□□□ -0.92
TCOF1-203ENST00000394269 MEGF10Q96KG7 1140 aa9.33□□□□□ -0.92
TCOF1-203ENST00000394269 TSNAXQ99598 290 aaKnown RBP9.33□□□□□ -0.92
TCOF1-203ENST00000394269 USP24Q9UPU5 2620 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 NAV2Q8IVL1 2488 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 IGKV1D-17A0A075B6S4 117 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 SPINT2O43291 252 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 CEBPGP53567 150 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 RUNX1Q01196 453 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 SHEQ5VZ18 495 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 PIGMQ9H3S5 423 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 ZFP57Q9NU63 452 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 PLA2G2EQ9NZK7 142 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 TACC2O95359 2948 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 UTP20O75691 2785 aaKnown RBP9.32□□□□□ -0.92
TCOF1-203ENST00000394269 SETD2Q9BYW2 2564 aaPredicted RBP9.32□□□□□ -0.92
TCOF1-203ENST00000394269 TXNL1O43396 289 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 IGLV2-14P01704 120 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 CEACAM8P31997 349 aaPredicted RBP9.32□□□□□ -0.92
TCOF1-203ENST00000394269 DYNLT3P51808 116 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 SRSF7Q16629 238 aaKnown RBP eCLIP9.32□□□□□ -0.92
TCOF1-203ENST00000394269 SPANXN5Q5MJ07 72 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 ZNF880Q6PDB4 577 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 TMEM108Q6UXF1 575 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 SPAG16Q8N0X2 631 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 TMEM252Q8N6L7 170 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 OR5D13Q8NGL4 314 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 FAM213BQ8TBF2 198 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 CCL13Q99616 98 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 USP9YO00507 2555 aaPredicted RBP9.32□□□□□ -0.92
TCOF1-203ENST00000394269 CRYBG3Q68DQ2 2970 aa9.32□□□□□ -0.92
TCOF1-203ENST00000394269 TRBV6-6A0A0A6YYG2 114 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 EIF3GO75821 320 aaKnown RBP eCLIP9.31□□□□□ -0.92
TCOF1-203ENST00000394269 IGKV1-39P01597 117 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 IGKV1D-39P04432 117 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 METTL15P1P0C7V9 234 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 P2RY1P47900 373 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 ERVFRD-1P60508 538 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 RPL30P62888 115 aaKnown RBP9.31□□□□□ -0.92
TCOF1-203ENST00000394269 BSPH1Q075Z2 132 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 FGFRL1Q8N441 504 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 CABLES2Q9BTV7 478 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 RHOFQ9HBH0 211 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 MBNL3Q9NUK0 354 aaKnown RBP9.31□□□□□ -0.92
TCOF1-203ENST00000394269 HELZ2Q9BYK8 2649 aaKnown RBP9.31□□□□□ -0.92
TCOF1-203ENST00000394269 TSPAN15O95858 294 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 GYPAP02724 150 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 CCKARP32238 428 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 RND3P61587 244 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 MZT1Q08AG7 82 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 NMSQ5H8A3 153 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 CCL17Q92583 94 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 BOD1Q96IK1 185 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 EIF5A2Q9GZV4 153 aaKnown RBP9.31□□□□□ -0.92
TCOF1-203ENST00000394269 IFT22Q9H7X7 185 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 HES4Q9HCC6 221 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 MTORP42345 2549 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 K7ENP7 123 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 CLDN1O95832 211 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 OR4A8P0C604 315 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 OR8G2PQ6IF36 304 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 TMEM88Q6PEY1 159 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 OR2G3Q8NGZ4 309 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 FAM212BQ9NTI7 297 aaPredicted RBP9.31□□□□□ -0.92
TCOF1-203ENST00000394269 FBXO7Q9Y3I1 522 aa9.31□□□□□ -0.92
TCOF1-203ENST00000394269 FAM90A27PA6NNH2 459 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.3□□□□□ -0.92
TCOF1-203ENST00000394269 NDUFB7P17568 137 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 HMGN3Q15651 99 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 GPR157Q5UAW9 335 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 SLC35E4Q6ICL7 350 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 ABHD14AQ9BUJ0 271 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 LIN7CQ9NUP9 197 aaKnown RBP9.3□□□□□ -0.92
TCOF1-203ENST00000394269 YLPM1P49750 1951 aaKnown RBP9.3□□□□□ -0.92
TCOF1-203ENST00000394269 ODAMA1E959 279 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 DPRXA6NFQ7 191 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 C17orf98A8MV24 154 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 TMPRSS2O15393 492 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 IGKV1-5P01602 117 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 ATF4P18848 351 aaPredicted RBP9.3□□□□□ -0.92
TCOF1-203ENST00000394269 EIF2S3LQ2VIR3 472 aaKnown RBP9.3□□□□□ -0.92
TCOF1-203ENST00000394269 ZNF585BQ52M93 769 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 UTF1Q5T230 341 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 NEUROG1Q92886 237 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 MED9Q9NWA0 146 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.3□□□□□ -0.925e-9■■■■□ 23.2
TCOF1-203ENST00000394269 GPR37O15354 613 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 IGHV1-46P01743 117 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 IRF2P14316 349 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 PPT1P50897 306 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 MIDNQ504T8 468 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 VKORC1L1Q8N0U8 176 aa9.3□□□□□ -0.92
TCOF1-203ENST00000394269 FAM216BQ8N7L0 139 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms