RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 TBC1D26Q86UD7 250 aa8.46□□□□□ -1.05
VPS53-202ENST00000389040 LRRC29Q8WV35 223 aa8.46□□□□□ -1.05
VPS53-202ENST00000389040 TP53RKQ96S44 253 aa8.46□□□□□ -1.05
VPS53-202ENST00000389040 CYTL1Q9NRR1 136 aa8.46□□□□□ -1.05
VPS53-202ENST00000389040 TREM2Q9NZC2 230 aa8.46□□□□□ -1.05
VPS53-202ENST00000389040 KAAG1Q9UBP8 84 aa8.46□□□□□ -1.05
VPS53-202ENST00000389040 PCDHB10Q9UN67 800 aa8.46□□□□□ -1.05
VPS53-202ENST00000389040 SESN1Q9Y6P5 492 aa8.46□□□□□ -1.05
VPS53-202ENST00000389040 IGKV1D-13A0A0B4J2D9 117 aa8.46□□□□□ -1.06
VPS53-202ENST00000389040 IGHV3-64DA0A0J9YX35 117 aa8.46□□□□□ -1.06
VPS53-202ENST00000389040 RNF223E7ERA6 249 aa8.46□□□□□ -1.06
VPS53-202ENST00000389040 SHOXO15266 292 aa8.46□□□□□ -1.06
VPS53-202ENST00000389040 CYB5R3P00387 301 aaPredicted RBP8.46□□□□□ -1.06
VPS53-202ENST00000389040 IGKV1-13P0DP09 117 aa8.46□□□□□ -1.06
VPS53-202ENST00000389040 RCC1P18754 421 aaPredicted RBP8.46□□□□□ -1.06
VPS53-202ENST00000389040 SMIM21Q3B7S5 101 aa8.46□□□□□ -1.06
VPS53-202ENST00000389040 FIP1L1Q6UN15 594 aaKnown RBP8.46□□□□□ -1.06
VPS53-202ENST00000389040 ZNF818PQ6ZRF7 136 aa8.46□□□□□ -1.06
VPS53-202ENST00000389040 MOB1BQ7L9L4 216 aa8.46□□□□□ -1.06
VPS53-202ENST00000389040 GAPTQ8N292 157 aa8.46□□□□□ -1.06
VPS53-202ENST00000389040 LHFPL5Q8TAF8 219 aa8.46□□□□□ -1.06
VPS53-202ENST00000389040 CABLES2Q9BTV7 478 aa8.46□□□□□ -1.06
VPS53-202ENST00000389040 SLC5A7Q9GZV3 580 aa8.46□□□□□ -1.06
VPS53-202ENST00000389040 TMEM222Q9H0R3 208 aa8.46□□□□□ -1.06
VPS53-202ENST00000389040 HES4Q9HCC6 221 aa8.46□□□□□ -1.06
VPS53-202ENST00000389040 TMED3Q9Y3Q3 217 aa8.46□□□□□ -1.06
VPS53-202ENST00000389040 PRRC2AP48634 2157 aaKnown RBP8.46□□□□□ -1.06
VPS53-202ENST00000389040 PPIAL4CA0A0B4J2A2 164 aa8.45□□□□□ -1.06
VPS53-202ENST00000389040 K7EPK0 472 aa8.45□□□□□ -1.06
VPS53-202ENST00000389040 SH2D1BO14796 132 aa8.45□□□□□ -1.06
VPS53-202ENST00000389040 SCGB1D2O95969 90 aa8.45□□□□□ -1.06
VPS53-202ENST00000389040 HKR1P10072 659 aa8.45□□□□□ -1.06
VPS53-202ENST00000389040 TMEM268Q5VZI3 342 aa8.45□□□□□ -1.06
VPS53-202ENST00000389040 ZNF497Q6ZNH5 498 aa8.45□□□□□ -1.06
VPS53-202ENST00000389040 BAP18Q8IXM2 172 aa8.45□□□□□ -1.06
VPS53-202ENST00000389040 CMTM1Q8IZ96 169 aa8.45□□□□□ -1.06
VPS53-202ENST00000389040 FAM71E2Q8N5Q1 922 aa8.45□□□□□ -1.06
VPS53-202ENST00000389040 SLC35G3Q8N808 338 aa8.45□□□□□ -1.06
VPS53-202ENST00000389040 OR10J5Q8NHC4 309 aa8.45□□□□□ -1.06
VPS53-202ENST00000389040 KIRREL1Q96J84 757 aa8.45□□□□□ -1.06
VPS53-202ENST00000389040 PATZ1Q9HBE1 687 aaKnown RBP8.45□□□□□ -1.06
VPS53-202ENST00000389040 ZFP57Q9NU63 452 aa8.45□□□□□ -1.06
VPS53-202ENST00000389040 LSM5Q9Y4Y9 91 aaKnown RBP8.45□□□□□ -1.06
VPS53-202ENST00000389040 IGHV4-61A0A0C4DH41 118 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 A8MXK9 166 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 B4DSR2 109 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 NPIPB11E5RHQ5 1161 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 TEX46H3BTG2 121 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 HSD17B6O14756 317 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 TAAR5O14804 337 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 TNFRSF13BO14836 293 aaPredicted RBP8.44□□□□□ -1.06
VPS53-202ENST00000389040 IGHV2-5P01817 119 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 MBPP02686 304 aaPredicted RBP8.44□□□□□ -1.06
VPS53-202ENST00000389040 FGF2P09038 288 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 ZP3P21754 424 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 RPL12P30050 165 aaKnown RBP8.44□□□□□ -1.06
VPS53-202ENST00000389040 LMO4P61968 165 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 ZNF826PQ6ZT77 177 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 HSD17B13Q7Z5P4 300 aaPredicted RBP8.44□□□□□ -1.06
VPS53-202ENST00000389040 H1FOOQ8IZA3 346 aaPredicted RBP8.44□□□□□ -1.06
VPS53-202ENST00000389040 CLDND2Q8NHS1 167 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 PLPPR1Q8TBJ4 325 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 LRRC20Q8TCA0 184 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 TMEM56Q96MV1 263 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 AKAP9Q99996 3911 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 ZNF665Q9H7R5 613 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 ZC4H2Q9NQZ6 224 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 CCL28Q9NRJ3 127 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 GLS2Q9UI32 602 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 POLR3KQ9Y2Y1 108 aaPredicted RBP8.44□□□□□ -1.06
VPS53-202ENST00000389040 UBE2J1Q9Y385 318 aaPredicted RBP8.44□□□□□ -1.06
VPS53-202ENST00000389040 OR2W1Q9Y3N9 320 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 TMEM56-RWDD3S4R434 201 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 CREBBPQ92793 2442 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 E5RGE8 158 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 HAND1O96004 215 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 WNT2P09544 360 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 GATA3P23771 443 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 TMEM249Q2WGJ8 235 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 AVPI1Q5T686 147 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 CYB5R2Q6BCY4 276 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 EIF4E3Q8N5X7 224 aaKnown RBP8.44□□□□□ -1.06
VPS53-202ENST00000389040 BVESQ8NE79 360 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 OR52M1Q8NGK5 317 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 IL1F10Q8WWZ1 152 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 NEIL1Q96FI4 390 aaPredicted RBP8.44□□□□□ -1.06
VPS53-202ENST00000389040 TRAPPC2LQ9UL33 140 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 NSG2Q9Y328 171 aa8.44□□□□□ -1.06
VPS53-202ENST00000389040 MYO9AB2RTY4 2548 aa8.43□□□□□ -1.06
VPS53-202ENST00000389040 MAST4O15021 2626 aa8.43□□□□□ -1.06
VPS53-202ENST00000389040 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.43□□□□□ -1.06
VPS53-202ENST00000389040 FOXH1O75593 365 aa8.43□□□□□ -1.06
VPS53-202ENST00000389040 CDS2O95674 445 aa8.43□□□□□ -1.06
VPS53-202ENST00000389040 STUMQ69YW2 141 aa8.43□□□□□ -1.06
VPS53-202ENST00000389040 ACP7Q6ZNF0 438 aa8.43□□□□□ -1.06
VPS53-202ENST00000389040 ZNF695Q8IW36 515 aa8.43□□□□□ -1.06
VPS53-202ENST00000389040 SELENOHQ8IZQ5 122 aaKnown RBP8.43□□□□□ -1.06
VPS53-202ENST00000389040 LINC01356Q8N9X3 169 aa8.43□□□□□ -1.06
VPS53-202ENST00000389040 OR8B3Q8NGG8 313 aa8.43□□□□□ -1.06
VPS53-202ENST00000389040 TMED6Q8WW62 240 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms