RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 OIT3Q8WWZ8 545 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 NUDT16L1Q9BRJ7 211 aaKnown RBP11.88□□□□□ -0.51
COL4A1-201ENST00000375820 TMEM229AB2RXF0 380 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 OR2H2O95918 312 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 PRSS2P07478 247 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 LINC00869P0C866 280 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 COX6B1P14854 86 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 UCP2P55851 309 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 INO80CQ6PI98 192 aaPredicted RBP11.88□□□□□ -0.51
COL4A1-201ENST00000375820 RBKSQ9H477 322 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 SCN1AP35498 2009 aa11.88□□□□□ -0.51
COL4A1-201ENST00000375820 ZFP36L2P47974 494 aaKnown RBP11.87□□□□□ -0.51
COL4A1-201ENST00000375820 MIC13Q5XKP0 118 aa11.87□□□□□ -0.51
COL4A1-201ENST00000375820 HSPB7Q9UBY9 170 aa11.87□□□□□ -0.51
COL4A1-201ENST00000375820 TMEM210A6NLX4 147 aa11.87□□□□□ -0.51
COL4A1-201ENST00000375820 PLA2G10O15496 165 aa11.87□□□□□ -0.51
COL4A1-201ENST00000375820 TSPAN2O60636 221 aa11.87□□□□□ -0.51
COL4A1-201ENST00000375820 GCGP01275 180 aa11.87□□□□□ -0.51
COL4A1-201ENST00000375820 PEAR1Q5VY43 1037 aaPredicted RBP11.87□□□□□ -0.51
COL4A1-201ENST00000375820 AKAP11Q9UKA4 1901 aa11.87□□□□□ -0.51
COL4A1-201ENST00000375820 RNF133Q8WVZ7 376 aa11.87□□□□□ -0.51
COL4A1-201ENST00000375820 TIMP4Q99727 224 aa11.87□□□□□ -0.51
COL4A1-201ENST00000375820 PGPA6NDG6 321 aa11.87□□□□□ -0.51
COL4A1-201ENST00000375820 C21orf140B9A014 251 aa11.87□□□□□ -0.51
COL4A1-201ENST00000375820 PITX3O75364 302 aa11.87□□□□□ -0.51
COL4A1-201ENST00000375820 PQLC2Q6ZP29 291 aa11.87□□□□□ -0.51
COL4A1-201ENST00000375820 PITPNC1Q9UKF7 332 aa11.87□□□□□ -0.51
COL4A1-201ENST00000375820 ELF5Q9UKW6 265 aaPredicted RBP11.87□□□□□ -0.51
COL4A1-201ENST00000375820 TMEM262E9PQX1 116 aa11.87□□□□□ -0.51
COL4A1-201ENST00000375820 RPL27AP46776 148 aaKnown RBP11.87□□□□□ -0.51
COL4A1-201ENST00000375820 ARID1AO14497 2285 aa11.87□□□□□ -0.51
COL4A1-201ENST00000375820 MMP16P51512 607 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 IBA57Q5T440 356 aaKnown RBP11.86□□□□□ -0.51
COL4A1-201ENST00000375820 LSMEM1Q8N8F7 131 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 KCNK7Q9Y2U2 307 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 IGHV3-49A0A0A0MS15 119 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 MUC1P15941 1255 aaPredicted RBP11.86□□□□□ -0.51
COL4A1-201ENST00000375820 MESP2Q0VG99 397 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 SURF2Q15527 256 aaPredicted RBP11.86□□□□□ -0.51
COL4A1-201ENST00000375820 TGIF1Q15583 401 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 UBE2V2Q15819 145 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 RARRES2Q99969 163 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 C7orf71A4D174 169 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 FOXS1O43638 330 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 GAPDHP04406 335 aaKnown RBP11.86□□□□□ -0.51
COL4A1-201ENST00000375820 PLPPR5Q32ZL2 321 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 KIAA1644Q3SXP7 199 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 ST6GALNAC2Q9UJ37 374 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 PSMB11A5LHX3 300 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 TRGC2P03986 189 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 ZNF79Q15937 498 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 SNAI3Q3KNW1 292 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 TNRC6CQ9HCJ0 1690 aaKnown RBP11.86□□□□□ -0.51
COL4A1-201ENST00000375820 CISD1Q9NZ45 108 aaKnown RBP11.86□□□□□ -0.51
COL4A1-201ENST00000375820 ZNF638Q14966 1978 aaKnown RBP11.86□□□□□ -0.51
COL4A1-201ENST00000375820 SLC25A17O43808 307 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 STAG3L2P0CL84 134 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 ERVFRD-1P60508 538 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 NUP37Q8NFH4 326 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 IL19Q9UHD0 177 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 TGIF2-C20orf24A0A0A6YYL0 155 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 ARF6P62330 175 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 ABLIM2Q6H8Q1 611 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 DDB2Q92466 427 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 DUX5Q96PT3 197 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 HIST1H4GQ99525 98 aa11.86□□□□□ -0.51
COL4A1-201ENST00000375820 PPP1R17O96001 155 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 THY1P04216 161 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 DLX6P56179 175 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 CXorf66Q5JRM2 361 aaPredicted RBP11.85□□□□□ -0.51
COL4A1-201ENST00000375820 hCG_38984A0A1B0GV85 526 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 HPRT1P00492 218 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 CXCL2P19875 107 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 KLRB1Q12918 225 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 FAM106CPP0CH98 169 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 ZNF273Q14593 569 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 CALHM1Q8IU99 346 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 MRPL13Q9BYD1 178 aaKnown RBP11.85□□□□□ -0.51
COL4A1-201ENST00000375820 PHLDA3Q9Y5J5 127 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.85□□□□□ -0.51
COL4A1-201ENST00000375820 HOXA6P31267 233 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 HOGA1Q86XE5 327 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 RBM38Q9H0Z9 239 aaKnown RBP11.85□□□□□ -0.51
COL4A1-201ENST00000375820 MOB4Q9Y3A3 225 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 TJP1Q07157 1748 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 MUC21A0A0G2JKD1 596 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 MUC21A0A140T8X8 626 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 EMP1P54849 157 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 MUC21Q5SSG8 566 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 CARFQ8N187 725 aa11.85□□□□□ -0.51
COL4A1-201ENST00000375820 RND2P52198 227 aa11.84□□□□□ -0.51
COL4A1-201ENST00000375820 CX3CL1P78423 397 aa11.84□□□□□ -0.51
COL4A1-201ENST00000375820 MBNL2Q5VZF2 373 aaKnown RBP11.84□□□□□ -0.51
COL4A1-201ENST00000375820 CCDC144NLQ6NUI1 221 aa11.84□□□□□ -0.51
COL4A1-201ENST00000375820 AMELYQ99218 206 aa11.84□□□□□ -0.51
COL4A1-201ENST00000375820 PKIAP61925 76 aa11.84□□□□□ -0.51
COL4A1-201ENST00000375820 MEIG1Q5JSS6 88 aa11.84□□□□□ -0.51
COL4A1-201ENST00000375820 SYT8Q8NBV8 401 aa11.84□□□□□ -0.51
COL4A1-201ENST00000375820 SH3BGRL3Q9H299 93 aa11.84□□□□□ -0.51
COL4A1-201ENST00000375820 NPVFQ9HCQ7 196 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms