RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 ZNF561Q8N587 486 aa11.06□□□□□ -0.64
SQSTM1-201ENST00000360718 OR2C3Q8N628 320 aa11.06□□□□□ -0.64
SQSTM1-201ENST00000360718 SFT2D1Q8WV19 159 aa11.06□□□□□ -0.64
SQSTM1-201ENST00000360718 TP53RKQ96S44 253 aa11.06□□□□□ -0.64
SQSTM1-201ENST00000360718 UFSP2Q9NUQ7 469 aa11.06□□□□□ -0.64
SQSTM1-201ENST00000360718 IL36RNQ9UBH0 155 aa11.06□□□□□ -0.64
SQSTM1-201ENST00000360718 RNF115Q9Y4L5 304 aa11.06□□□□□ -0.64
SQSTM1-201ENST00000360718 PIGBOS1A0A0B4J2F0 54 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 A0A1B0GW64 132 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 DUXBA0A1W2PPF3 345 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 UMAD1C9J7I0 102 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 M0R036 132 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 HSPA12AO43301 675 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 PLAUP00749 431 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 SNRNP70P08621 437 aaKnown RBP11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 CTXN2P0C2S0 81 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 NKX2-1P43699 371 aaPredicted RBP11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 KCNJ3P48549 501 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 EWSR1Q01844 656 aaKnown RBP eCLIP11.05□□□□□ -0.648e-8■□□□□ 9.9
SQSTM1-201ENST00000360718 HSD17B11Q8NBQ5 300 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 C2CD4CQ8TF44 421 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 TMEM56Q96MV1 263 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 CLCC1Q96S66 551 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 SLC35B3Q9H1N7 401 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 PLEKHF2Q9H8W4 249 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 TMEM56-RWDD3S4R434 201 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 C7orf77A4D0Y5 90 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 S100A6P06703 90 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 ERVK11-1P61568 191 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 VAMP2P63027 116 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 PDCD1Q15116 288 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 RHEBQ15382 184 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 AWAT1Q58HT5 328 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 SPIN3Q5JUX0 258 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 ZFP82Q8N141 532 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 NEK7Q8TDX7 302 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 OR2V2Q96R30 315 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 DIRC2Q96SL1 478 aa11.05□□□□□ -0.64
SQSTM1-201ENST00000360718 KIR2DS1A0A191URI9 304 aa11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 GNRHRP30968 328 aa11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 KIR2DS4P43632 304 aa11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 KIR2DS1Q14954 304 aa11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 IGSF11Q5DX21 431 aa11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 WDR82Q6UXN9 313 aa11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 ZNF826PQ6ZT77 177 aa11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 C11orf53Q8IXP5 236 aa11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 MEGF10Q96KG7 1140 aa11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 SCRT1Q9BWW7 348 aa11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 DEGS1O15121 323 aa11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 PITX3O75364 302 aa11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 PTBP3O95758 552 aaKnown RBP11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 MMP9P14780 707 aa11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 ZNF44P15621 663 aa11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 LOXP28300 417 aaPredicted RBP11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 APOBEC3AP31941 199 aaPredicted RBP11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 TNFAIP6P98066 277 aaPredicted RBP11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 TBC1D26Q86UD7 250 aa11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 FAM213BQ8TBF2 198 aa11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 HIST1H2BAQ96A08 127 aa11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 UNKLQ9H9P5 680 aaKnown RBP11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 Q9N2K0 584 aa11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 IL19Q9UHD0 177 aa11.04□□□□□ -0.64
SQSTM1-201ENST00000360718 ARFGEF3Q5TH69 2177 aa11.03□□□□□ -0.64
SQSTM1-201ENST00000360718 BTBD17A6NE02 478 aa11.03□□□□□ -0.64
SQSTM1-201ENST00000360718 DEFB108AA8MXU0 73 aa11.03□□□□□ -0.64
SQSTM1-201ENST00000360718 E7EQL1 145 aa11.03□□□□□ -0.64
SQSTM1-201ENST00000360718 C19orf84I3L1E1 186 aa11.03□□□□□ -0.64
SQSTM1-201ENST00000360718 SH2D1BO14796 132 aa11.03□□□□□ -0.64
SQSTM1-201ENST00000360718 S100A8P05109 93 aa11.03□□□□□ -0.64
SQSTM1-201ENST00000360718 RNF224P0DH78 156 aa11.03□□□□□ -0.64
SQSTM1-201ENST00000360718 S100GP29377 79 aa11.03□□□□□ -0.64
SQSTM1-201ENST00000360718 HABP2Q14520 560 aaPredicted RBP11.03□□□□□ -0.64
SQSTM1-201ENST00000360718 SMIM21Q3B7S5 101 aa11.03□□□□□ -0.64
SQSTM1-201ENST00000360718 TMEM182Q6ZP80 229 aaPredicted RBP11.03□□□□□ -0.64
SQSTM1-201ENST00000360718 Q6ZPA2 131 aa11.03□□□□□ -0.64
SQSTM1-201ENST00000360718 OR2G3Q8NGZ4 309 aa11.03□□□□□ -0.64
SQSTM1-201ENST00000360718 ITLN1Q8WWA0 313 aa11.03□□□□□ -0.64
SQSTM1-201ENST00000360718 SH3BGRL3Q9H299 93 aa11.03□□□□□ -0.64
SQSTM1-201ENST00000360718 RIMS4Q9H426 269 aaPredicted RBP11.03□□□□□ -0.64
SQSTM1-201ENST00000360718 SPTAN1Q13813 2472 aaKnown RBP11.03□□□□□ -0.64
SQSTM1-201ENST00000360718 FAM24AA6NFZ4 105 aa11.02□□□□□ -0.64
SQSTM1-201ENST00000360718 K7N7A8 449 aa11.02□□□□□ -0.64
SQSTM1-201ENST00000360718 HS3ST1O14792 307 aa11.02□□□□□ -0.64
SQSTM1-201ENST00000360718 IGHV1-46P01743 117 aa11.02□□□□□ -0.64
SQSTM1-201ENST00000360718 CMTM1Q8IZ96 169 aa11.02□□□□□ -0.64
SQSTM1-201ENST00000360718 SELENOHQ8IZQ5 122 aaKnown RBP11.02□□□□□ -0.64
SQSTM1-201ENST00000360718 CD300LFQ8TDQ1 290 aa11.02□□□□□ -0.64
SQSTM1-201ENST00000360718 LRRC29Q8WV35 223 aa11.02□□□□□ -0.64
SQSTM1-201ENST00000360718 C11orf1Q9H5F2 150 aa11.02□□□□□ -0.64
SQSTM1-201ENST00000360718 HES4Q9HCC6 221 aa11.02□□□□□ -0.64
SQSTM1-201ENST00000360718 CISD1Q9NZ45 108 aaKnown RBP11.02□□□□□ -0.64
SQSTM1-201ENST00000360718 RALYQ9UKM9 306 aaKnown RBP11.02□□□□□ -0.64
SQSTM1-201ENST00000360718 DCHS2Q6V1P9 2916 aa11.02□□□□□ -0.64
SQSTM1-201ENST00000360718 CLEC18AA5D8T8 446 aa11.02□□□□□ -0.65
SQSTM1-201ENST00000360718 NAPSAO96009 420 aa11.02□□□□□ -0.65
SQSTM1-201ENST00000360718 S100A9P06702 114 aaKnown RBP11.02□□□□□ -0.65
SQSTM1-201ENST00000360718 SMIM6P0DI80 62 aa11.02□□□□□ -0.65
SQSTM1-201ENST00000360718 TNFRSF1AP19438 455 aa11.02□□□□□ -0.65
SQSTM1-201ENST00000360718 VDAC1P21796 283 aa11.02□□□□□ -0.65
SQSTM1-201ENST00000360718 LMO1P25800 156 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms