RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 SFTPCP11686 197 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 HLA-DRB3P79483 266 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 HLA-DRB5Q30154 266 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 GTF3AQ92664 365 aaKnown RBP6.31□□□□□ -1.4
VPS13A-202ENST00000357409 LINC01587Q99440 93 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 C11orf94C9JXX5 98 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 KLF7O75840 302 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-202ENST00000357409 FOXG1P55316 489 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-202ENST00000357409 NRN1LQ496H8 165 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 IGFL4Q6B9Z1 124 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 INO80CQ6PI98 192 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-202ENST00000357409 FAM168AQ92567 244 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 ANXA10Q9UJ72 324 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 NUDT3O95989 172 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 C2orf83Q53S99 150 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 MIC13Q5XKP0 118 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 CYB5R1Q9UHQ9 305 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 EXOGQ9Y2C4 368 aaKnown RBP6.31□□□□□ -1.4
VPS13A-202ENST00000357409 RNF115Q9Y4L5 304 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 C1QAP02745 245 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 CRYBB3P26998 211 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 LINC00205P59089 165 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 BSPH1Q075Z2 132 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 TEPPQ6URK8 271 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 PCSK4Q6UW60 755 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 PQLC2Q6ZP29 291 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 C1QTNF9BB2RNN3 333 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 BGLAPP02818 100 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 C1QTNF9P0C862 333 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 KIR2DL2P43627 348 aaPredicted RBP6.31□□□□□ -1.4
VPS13A-202ENST00000357409 DLK1P80370 383 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 COLCA1Q6ZS62 124 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 ATG101Q9BSB4 218 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 IDI2-AS1Q9NZ38 188 aa6.31□□□□□ -1.4
VPS13A-202ENST00000357409 HOXC4P09017 264 aaPredicted RBP6.3□□□□□ -1.4
VPS13A-202ENST00000357409 LIMS3P0CW19 117 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 LIMS4P0CW20 117 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 IFT172Q9UG01 1749 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 TAAR5O14804 337 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 RGS13O14921 159 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 DUSP21Q9H596 190 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 PXMP4Q9Y6I8 212 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 C5orf67F2Z3F1 127 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 SUMO3P55854 103 aaPredicted RBP6.3□□□□□ -1.4
VPS13A-202ENST00000357409 CFHR3Q02985 330 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 RELQ04864 619 aaPredicted RBP6.3□□□□□ -1.4
VPS13A-202ENST00000357409 OR4C13Q8NGP0 309 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 RSPO3Q9BXY4 272 aaPredicted RBP6.3□□□□□ -1.4
VPS13A-202ENST00000357409 RPL36A-HNRNPH2H7BZ11 118 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 ATP5G2Q06055 141 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 ICAM4Q14773 271 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 OR4A47Q6IF82 309 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 DUX3Q96PT4 197 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 TRGV2A0A075B6R0 118 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 TRAV40A0A0B4J280 105 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 K7N7A8 449 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 OR1P1Q8NH06 330 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 NUDT16L1Q9BRJ7 211 aaKnown RBP6.3□□□□□ -1.4
VPS13A-202ENST00000357409 CKS2P33552 79 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 ASCL5Q7RTU5 278 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 FGFRL1Q8N441 504 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 OR11H7Q8NGC8 314 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 DLL3Q9NYJ7 618 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 HIGD1AQ9Y241 93 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 SELENOTP62341 195 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 CBLN2Q8IUK8 224 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 OR1L8Q8NGR8 309 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 GPR146Q96CH1 333 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 RARRES2Q99969 163 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 BET1LQ9NYM9 111 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 MYH6P13533 1939 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 S1PR2O95136 353 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 KCNJ3P48549 501 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 C9orf106Q8NAJ2 232 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 OR5AU1Q8NGC0 362 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 WNT10AQ9GZT5 417 aa6.3□□□□□ -1.4
VPS13A-202ENST00000357409 TMEM189A5PLL7 270 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 AHRRA9YTQ3 701 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 RNASE4P34096 147 aaKnown RBP6.29□□□□□ -1.4
VPS13A-202ENST00000357409 TXNDC17Q9BRA2 123 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 A0A096LPF7 62 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 ANKRD20A5PA0PJZ0 165 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 B4DEV8 164 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 COX6A1P12074 109 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 TDGF1P13385 188 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 ID1P41134 155 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 CLDN18P56856 261 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 ZNF585BQ52M93 769 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 STHQ8IWL8 128 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 OR10G8Q8NGN5 311 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 OR10C1Q96KK4 312 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 MAP1LC3CQ9BXW4 147 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 PHLDA3Q9Y5J5 127 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 AREGP15514 252 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 FOXF2Q12947 444 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 UNQ9370/PRO34162Q6UXP9 181 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 Q8IYB0 196 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 OR51G1Q8NGK1 321 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 SGMS2Q8NHU3 365 aa6.29□□□□□ -1.4
VPS13A-202ENST00000357409 C8orf46Q8TAG6 207 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms