RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 NXPH1P58417 271 aa16.91■□□□□ 0.3
CCDC88B-202ENST00000356786 MESP2Q0VG99 397 aa16.91■□□□□ 0.3
CCDC88B-202ENST00000356786 IBA57Q5T440 356 aaKnown RBP16.91■□□□□ 0.3
CCDC88B-202ENST00000356786 J3QR06 171 aa16.91■□□□□ 0.3
CCDC88B-202ENST00000356786 K7EQS6 105 aa16.91■□□□□ 0.3
CCDC88B-202ENST00000356786 KLF3P57682 345 aaPredicted RBP16.91■□□□□ 0.3
CCDC88B-202ENST00000356786 TAS2R60P59551 318 aa16.91■□□□□ 0.3
CCDC88B-202ENST00000356786 GNB2P62879 340 aa16.91■□□□□ 0.3
CCDC88B-202ENST00000356786 CLEC5AQ9NY25 188 aa16.91■□□□□ 0.3
CCDC88B-202ENST00000356786 MIA3Q5JRA6 1907 aa16.91■□□□□ 0.3
CCDC88B-202ENST00000356786 STAG3L2P0CL84 134 aa16.91■□□□□ 0.3
CCDC88B-202ENST00000356786 SPINK14Q6IE38 97 aa16.91■□□□□ 0.3
CCDC88B-202ENST00000356786 SOSTQ9BQB4 213 aa16.91■□□□□ 0.3
CCDC88B-202ENST00000356786 TMEM14DPA8MWL7 114 aa16.9■□□□□ 0.3
CCDC88B-202ENST00000356786 K7ESF4 209 aa16.9■□□□□ 0.3
CCDC88B-202ENST00000356786 PLP1P60201 277 aa16.9■□□□□ 0.3
CCDC88B-202ENST00000356786 HIKESHIQ53FT3 197 aa16.9■□□□□ 0.3
CCDC88B-202ENST00000356786 TMSB15BA0A087X1C1 80 aa16.9■□□□□ 0.3
CCDC88B-202ENST00000356786 A8MWL6 223 aa16.9■□□□□ 0.3
CCDC88B-202ENST00000356786 SPRED2Q7Z698 418 aa16.9■□□□□ 0.3
CCDC88B-202ENST00000356786 ZDHHC8Q9ULC8 765 aa16.9■□□□□ 0.3
CCDC88B-202ENST00000356786 TRAV38-1A0A0B4J264 116 aa16.9■□□□□ 0.3
CCDC88B-202ENST00000356786 KLF4O43474 513 aa16.9■□□□□ 0.3
CCDC88B-202ENST00000356786 MPDU1O75352 247 aa16.9■□□□□ 0.3
CCDC88B-202ENST00000356786 ORM1P02763 201 aa16.9■□□□□ 0.3
CCDC88B-202ENST00000356786 FOXL2P58012 376 aa16.9■□□□□ 0.3
CCDC88B-202ENST00000356786 RELBQ01201 579 aa16.9■□□□□ 0.3
CCDC88B-202ENST00000356786 TEX30Q5JUR7 227 aa16.9■□□□□ 0.3
CCDC88B-202ENST00000356786 FAM216AQ8WUB2 273 aa16.9■□□□□ 0.3
CCDC88B-202ENST00000356786 PERPQ96FX8 193 aa16.9■□□□□ 0.3
CCDC88B-202ENST00000356786 ZFP30Q9Y2G7 519 aa16.9■□□□□ 0.3
CCDC88B-202ENST00000356786 AKAP6Q13023 2319 aa16.9■□□□□ 0.3
CCDC88B-202ENST00000356786 PGLYRP1O75594 196 aaPredicted RBP16.89■□□□□ 0.3
CCDC88B-202ENST00000356786 KBTBD11O94819 623 aa16.89■□□□□ 0.3
CCDC88B-202ENST00000356786 DEFB109BQ30KR1 87 aa16.89■□□□□ 0.3
CCDC88B-202ENST00000356786 MUC15Q8N387 334 aa16.89■□□□□ 0.3
CCDC88B-202ENST00000356786 SLC25A33Q9BSK2 321 aa16.89■□□□□ 0.3
CCDC88B-202ENST00000356786 FAM206AQ9NX38 181 aa16.89■□□□□ 0.3
CCDC88B-202ENST00000356786 IGHV1OR15-9A0A0B4J2B8 117 aa16.89■□□□□ 0.29
CCDC88B-202ENST00000356786 COX7A1P24310 79 aa16.89■□□□□ 0.29
CCDC88B-202ENST00000356786 FGF12P61328 243 aa16.89■□□□□ 0.29
CCDC88B-202ENST00000356786 CTAG1AP78358 180 aa16.89■□□□□ 0.29
CCDC88B-202ENST00000356786 LINC00596Q86U02 117 aa16.89■□□□□ 0.29
CCDC88B-202ENST00000356786 OR52L2PQ8NGH6 319 aa16.89■□□□□ 0.29
CCDC88B-202ENST00000356786 THY1P04216 161 aa16.89■□□□□ 0.29
CCDC88B-202ENST00000356786 IZUMO4Q1ZYL8 232 aa16.89■□□□□ 0.29
CCDC88B-202ENST00000356786 KHDC1LQ5JSQ8 128 aa16.89■□□□□ 0.29
CCDC88B-202ENST00000356786 HARBI1Q96MB7 349 aa16.89■□□□□ 0.29
CCDC88B-202ENST00000356786 COL25A1Q9BXS0 654 aaPredicted RBP16.89■□□□□ 0.29
CCDC88B-202ENST00000356786 RPRMQ9NS64 109 aa16.89■□□□□ 0.29
CCDC88B-202ENST00000356786 THYN1Q9P016 225 aa16.89■□□□□ 0.29
CCDC88B-202ENST00000356786 RALYQ9UKM9 306 aaKnown RBP16.89■□□□□ 0.29
CCDC88B-202ENST00000356786 TRAV14DV4A0A0A6YYC5 116 aa16.89■□□□□ 0.29
CCDC88B-202ENST00000356786 UNC119Q13432 240 aa16.89■□□□□ 0.29
CCDC88B-202ENST00000356786 SELENOHQ8IZQ5 122 aaKnown RBP16.89■□□□□ 0.29
CCDC88B-202ENST00000356786 G6PC2Q9NQR9 355 aa16.89■□□□□ 0.29
CCDC88B-202ENST00000356786 IGKV1D-42A0A075B6H8 117 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 ACP1P24666 158 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 TRA2AQ13595 282 aaKnown RBP eCLIP16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 FGFRL1Q8N441 504 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 ADAM11O75078 769 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 LEPROTL1O95214 131 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 HOXA5P20719 270 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 ATOH7Q8N100 152 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 LHFPL6Q9Y693 200 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 SRIP30626 198 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 TMEM187Q14656 261 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 TGIF2LYQ8IUE0 185 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 TPRX1Q8N7U7 411 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 PAXXQ9BUH6 204 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 FOXJ2Q9P0K8 574 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 IL36RNQ9UBH0 155 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 TRAV17A0A0B4J275 112 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 OTX1P32242 354 aaPredicted RBP16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 PSG4Q00888 419 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 SLC25A34Q6PIV7 304 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 GLRX5Q86SX6 157 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 OR2Y1Q8NGV0 311 aa16.88■□□□□ 0.29
CCDC88B-202ENST00000356786 DMRTA1Q5VZB9 504 aa16.87■□□□□ 0.29
CCDC88B-202ENST00000356786 QTRT1Q9BXR0 403 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-202ENST00000356786 ZNF506Q5JVG8 444 aa16.87■□□□□ 0.29
CCDC88B-202ENST00000356786 MIC13Q5XKP0 118 aa16.87■□□□□ 0.29
CCDC88B-202ENST00000356786 TMPRSS2O15393 492 aa16.87■□□□□ 0.29
CCDC88B-202ENST00000356786 HERPUD1Q15011 391 aa16.87■□□□□ 0.29
CCDC88B-202ENST00000356786 C3AR1Q16581 482 aa16.87■□□□□ 0.29
CCDC88B-202ENST00000356786 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-202ENST00000356786 A0A0J9YW62 118 aa16.87■□□□□ 0.29
CCDC88B-202ENST00000356786 C5orf67F2Z3F1 127 aa16.87■□□□□ 0.29
CCDC88B-202ENST00000356786 M0R296 226 aa16.87■□□□□ 0.29
CCDC88B-202ENST00000356786 MT-CO3P00414 261 aa16.87■□□□□ 0.29
CCDC88B-202ENST00000356786 LIFP15018 202 aa16.87■□□□□ 0.29
CCDC88B-202ENST00000356786 SSPNQ14714 243 aa16.87■□□□□ 0.29
CCDC88B-202ENST00000356786 RBM14Q96PK6 669 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-202ENST00000356786 LOC389332A0A1B0GUA5 103 aa16.86■□□□□ 0.29
CCDC88B-202ENST00000356786 PQLC2Q6ZP29 291 aa16.86■□□□□ 0.29
CCDC88B-202ENST00000356786 OR1L8Q8NGR8 309 aa16.86■□□□□ 0.29
CCDC88B-202ENST00000356786 ARID2Q68CP9 1835 aa16.86■□□□□ 0.29
CCDC88B-202ENST00000356786 SCN10AQ9Y5Y9 1956 aa16.86■□□□□ 0.29
CCDC88B-202ENST00000356786 OR4C46A6NHA9 309 aa16.86■□□□□ 0.29
CCDC88B-202ENST00000356786 FAM157AC9JC47 383 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms