RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 GPBAR1Q8TDU6 330 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 FAM222BQ8WU58 562 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 AAMDCQ9H7C9 122 aa7.56□□□□□ -1.2
RTN3-202ENST00000339997 TMEM265A0A087WTH1 108 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 LILRA5A6NI73 299 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 DHRS7CA6NNS2 312 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 ATXN7O15265 892 aaPredicted RBP7.55□□□□□ -1.2
RTN3-202ENST00000339997 MAGEA5P43359 124 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 SLC36A1Q7Z2H8 476 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 CARFQ8N187 725 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 GAL3ST2Q9H3Q3 398 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 GPR132Q9UNW8 380 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 OR2A4O95047 310 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 HKR1P10072 659 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 SCAND1P57086 179 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 SMAGPQ0VAQ4 97 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 UNC119Q13432 240 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 CD200R1LQ6Q8B3 271 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 HOGA1Q86XE5 327 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 FBLIM1Q8WUP2 373 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 ZNF764Q96H86 408 aaPredicted RBP7.55□□□□□ -1.2
RTN3-202ENST00000339997 OR2A7Q96R45 310 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 RTN4RQ9BZR6 473 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 UBE2ZQ9H832 354 aaPredicted RBP7.55□□□□□ -1.2
RTN3-202ENST00000339997 LRRC37A2A6NM11 1700 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 CGB1A6NKQ9 187 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 TMEM127O75204 238 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 FCGR3AP08637 254 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 ZNF345Q14585 488 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 SLC23A3Q6PIS1 610 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 OR52L2PQ8NGH6 319 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 LEAP2Q969E1 77 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 ST6GALNAC6Q969X2 333 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 SSBP3Q9BWW4 388 aaPredicted RBP7.55□□□□□ -1.2
RTN3-202ENST00000339997 GSN-AS1Q9NRJ2 163 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 IFITM10A6NMD0 228 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 PATE3B3GLJ2 98 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 K7EQS6 105 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 SSTR5P35346 364 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 WDR74Q6RFH5 385 aaPredicted RBP7.55□□□□□ -1.2
RTN3-202ENST00000339997 VKORC1L1Q8N0U8 176 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 WDR31Q8NA23 367 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 OR4X1Q8NH49 305 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 TMEM56Q96MV1 263 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 TP53RKQ96S44 253 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 WNT10AQ9GZT5 417 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 ZNF71Q9NQZ8 489 aaPredicted RBP7.55□□□□□ -1.2
RTN3-202ENST00000339997 TMEM74BQ9NUR3 256 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 RALGAPA1Q6GYQ0 2036 aa7.55□□□□□ -1.2
RTN3-202ENST00000339997 PTPRFP10586 1907 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 IGHV3-35A0A0C4DH35 117 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 TBX6O95947 436 aaPredicted RBP7.54□□□□□ -1.2
RTN3-202ENST00000339997 FGF2P09038 288 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 PRR31Q5SQ13 230 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 DMRTA1Q5VZB9 504 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 MOGAT3Q86VF5 341 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 PDPNQ86YL7 162 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 NUP37Q8NFH4 326 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 RPEQ96AT9 228 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 TMEM191AQ9H0A3 160 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 CACFD1Q9UGQ2 172 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 OR2W1Q9Y3N9 320 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 DSPPQ9NZW4 1301 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 NDUFB3O43676 98 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 P01737 135 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 SRFP11831 508 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 CDCP2Q5VXM1 449 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 ZNF841Q6ZN19 808 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 TMEM116Q8NCL8 245 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 ALX4Q9H161 411 aaPredicted RBP7.54□□□□□ -1.2
RTN3-202ENST00000339997 RBKSQ9H477 322 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 THY1P04216 161 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 RAC3P60763 192 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 RELBQ01201 579 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 MEF2BQ02080 365 aaPredicted RBP7.54□□□□□ -1.2
RTN3-202ENST00000339997 VMA21Q3ZAQ7 101 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 MIC13Q5XKP0 118 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 ABLIM2Q6H8Q1 611 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 OR4F17Q8NGA8 305 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 MRAP2Q96G30 205 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 C14orf144Q96I85 54 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 GPX7Q96SL4 187 aaPredicted RBP7.54□□□□□ -1.2
RTN3-202ENST00000339997 NUDT16L1Q9BRJ7 211 aaKnown RBP7.54□□□□□ -1.2
RTN3-202ENST00000339997 DDA1Q9BW61 102 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 CHST5Q9GZS9 411 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 SIP14410 1827 aa7.54□□□□□ -1.2
RTN3-202ENST00000339997 DEDDO75618 318 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 CDS2O95674 445 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 SP1P08047 785 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 CD99P14209 185 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 HERVK_113P61574 105 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 SRSF9Q13242 221 aaKnown RBP eCLIP7.53□□□□□ -1.2
RTN3-202ENST00000339997 C1QL2Q7Z5L3 287 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 IMMP2LQ96T52 175 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 NEU1Q99519 415 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 HAND1O96004 215 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 APCSP02743 223 aa7.53□□□□□ -1.2
RTN3-202ENST00000339997 FOXA3P55318 350 aaPredicted RBP7.53□□□□□ -1.2
RTN3-202ENST00000339997 CTAG1AP78358 180 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 329.9 ms