RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 NUBP1P53384 320 aa11.27□□□□□ -0.6
USP47-202ENST00000339865 RNPS1Q15287 305 aaKnown RBP11.27□□□□□ -0.6
USP47-202ENST00000339865 OR4A5Q8NH83 315 aa11.27□□□□□ -0.6
USP47-202ENST00000339865 PHLDA1Q8WV24 401 aaPredicted RBP11.27□□□□□ -0.6
USP47-202ENST00000339865 NEUROG1Q92886 237 aa11.27□□□□□ -0.6
USP47-202ENST00000339865 A0A1W2PQM1 296 aa11.27□□□□□ -0.61
USP47-202ENST00000339865 SOCS1O15524 211 aa11.27□□□□□ -0.61
USP47-202ENST00000339865 PPYP01298 95 aa11.27□□□□□ -0.61
USP47-202ENST00000339865 KLF9Q13886 244 aaPredicted RBP11.27□□□□□ -0.61
USP47-202ENST00000339865 TP53I13Q8NBR0 393 aaPredicted RBP11.27□□□□□ -0.61
USP47-202ENST00000339865 KCNK17Q96T54 332 aa11.27□□□□□ -0.61
USP47-202ENST00000339865 PLA2G3Q9NZ20 509 aa11.27□□□□□ -0.61
USP47-202ENST00000339865 SLC25A42Q86VD7 318 aa11.27□□□□□ -0.61
USP47-202ENST00000339865 PUSL1Q8N0Z8 303 aaKnown RBP11.27□□□□□ -0.61
USP47-202ENST00000339865 OR2K2Q8NGT1 345 aa11.27□□□□□ -0.61
USP47-202ENST00000339865 ZNF414Q96IQ9 312 aa11.27□□□□□ -0.61
USP47-202ENST00000339865 SYT11Q9BT88 431 aa11.27□□□□□ -0.61
USP47-202ENST00000339865 LINC00862A6NCI5 91 aa11.27□□□□□ -0.61
USP47-202ENST00000339865 PITX3O75364 302 aa11.27□□□□□ -0.61
USP47-202ENST00000339865 HBBP68871 147 aa11.27□□□□□ -0.61
USP47-202ENST00000339865 ST6GALNAC6Q969X2 333 aa11.27□□□□□ -0.61
USP47-202ENST00000339865 GPR82Q96P67 336 aa11.27□□□□□ -0.61
USP47-202ENST00000339865 FNDC4Q9H6D8 234 aaPredicted RBP11.27□□□□□ -0.61
USP47-202ENST00000339865 CA10Q9NS85 328 aa11.27□□□□□ -0.61
USP47-202ENST00000339865 ZNF275Q9NSD4 429 aaPredicted RBP11.27□□□□□ -0.61
USP47-202ENST00000339865 PRR14LQ5THK1 2151 aa11.27□□□□□ -0.61
USP47-202ENST00000339865 TMEM50AO95807 157 aa11.27□□□□□ -0.61
USP47-202ENST00000339865 SRSF6Q13247 344 aaKnown RBP11.27□□□□□ -0.61
USP47-202ENST00000339865 WIPI1Q5MNZ9 446 aaPredicted RBP11.27□□□□□ -0.61
USP47-202ENST00000339865 C1QTNF12Q5T7M4 302 aa11.27□□□□□ -0.61
USP47-202ENST00000339865 MTCH2Q9Y6C9 303 aa11.27□□□□□ -0.61
USP47-202ENST00000339865 ZNF142P52746 1687 aaPredicted RBP11.27□□□□□ -0.61
USP47-202ENST00000339865 BCL2P10415 239 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 TMEM50BP56557 158 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 OR51B2Q9Y5P1 312 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 TIAM2Q8IVF5 1701 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 IL20Q9NYY1 176 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 DMRT1Q9Y5R6 373 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 CFDP00746 253 aaPredicted RBP11.26□□□□□ -0.61
USP47-202ENST00000339865 RAE1P78406 368 aaKnown RBP11.26□□□□□ -0.61
USP47-202ENST00000339865 CXXC4Q9H2H0 198 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 PSG2P11465 335 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 FGF9P31371 208 aaPredicted RBP11.26□□□□□ -0.61
USP47-202ENST00000339865 REG1BP48304 166 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 PABPC1L2AQ5JQF8 200 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 NT5CQ8TCD5 201 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 GALNT14Q96FL9 552 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 MS4A4AQ96JQ5 239 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 PRNDQ9UKY0 176 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 KNDC1Q76NI1 1749 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 CEACAM18A8MTB9 384 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 GALP22466 123 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 SNAI3Q3KNW1 292 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 PXMP4Q9Y6I8 212 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 DSCAML1Q8TD84 2053 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 NPFFO15130 113 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 GFRA3O60609 400 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 CDK2AP2O75956 126 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 CX3CL1P78423 397 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 TOX2Q96NM4 488 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 TOMM7Q9P0U1 55 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 ZDHHC8Q9ULC8 765 aa11.26□□□□□ -0.61
USP47-202ENST00000339865 OR11H12B2RN74 326 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 HOXA3O43365 443 aaPredicted RBP11.25□□□□□ -0.61
USP47-202ENST00000339865 MPZL1O95297 269 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 ZNF562Q6V9R5 426 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 OR11H1Q8NG94 326 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 OR11H2Q8NH07 326 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 KCNE5Q9UJ90 142 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 ETHE1O95571 254 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 ANOS1P23352 680 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 SRSF12Q8WXF0 261 aaKnown RBP11.25□□□□□ -0.61
USP47-202ENST00000339865 RND1Q92730 232 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 ZNF707Q96C28 371 aaPredicted RBP11.25□□□□□ -0.61
USP47-202ENST00000339865 WDFY2Q96P53 400 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 SLC17A3O00476 420 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 CTSDP07339 412 aaPredicted RBP11.25□□□□□ -0.61
USP47-202ENST00000339865 AGAP20933 346 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 TET1Q8NFU7 2136 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 ZNF48Q96MX3 618 aaPredicted RBP11.25□□□□□ -0.61
USP47-202ENST00000339865 HYPMO75409 117 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 RAB9AP51151 201 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 ZNF784Q8NCA9 323 aaPredicted RBP11.25□□□□□ -0.61
USP47-202ENST00000339865 PGLYRP3Q96LB9 341 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 KCPQ6ZWJ8 1503 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 DDX60Q8IY21 1712 aaKnown RBP11.25□□□□□ -0.61
USP47-202ENST00000339865 IGKV3D-20A0A0C4DH25 116 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 NPIPB8E9PQR5 432 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 NPIPB9F8W1W9 429 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 NPIPB7O75200 414 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 NDUFA3O95167 84 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 CDKN2AP42771 156 aaKnown RBP11.25□□□□□ -0.61
USP47-202ENST00000339865 XAF1Q6GPH4 301 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 NPVFQ9HCQ7 196 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 SAA1P0DJI8 122 aaPredicted RBP11.25□□□□□ -0.61
USP47-202ENST00000339865 SLC25A1P53007 311 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 RNASEH2CQ8TDP1 164 aaKnown RBP11.25□□□□□ -0.61
USP47-202ENST00000339865 SIGLEC7Q9Y286 467 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 TMEM56-RWDD3S4R434 201 aa11.25□□□□□ -0.61
USP47-202ENST00000339865 SFTPCP11686 197 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms