RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 IGHV3-74A0A0B4J1X5 117 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 hCG_38984A0A1B0GV85 526 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 C7orf77A4D0Y5 90 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 RPL27AP46776 148 aaKnown RBP10.95□□□□□ -0.66
SDC3-201ENST00000336798 MFAP2P55001 183 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 ARF6P62330 175 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 BHLHA9Q7RTU4 235 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 OR11H7Q8NGC8 314 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 WDR34Q96EX3 536 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 DIRC2Q96SL1 478 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 NEU1Q99519 415 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 SPAG17Q6Q759 2223 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 PPP1R17O96001 155 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 THY1P04216 161 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 PEBP1P30086 187 aaKnown RBP10.95□□□□□ -0.66
SDC3-201ENST00000336798 EMP1P54849 157 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 PNRC1Q12796 327 aaPredicted RBP10.95□□□□□ -0.66
SDC3-201ENST00000336798 WDFY1Q8IWB7 410 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 ZNF721Q8TF20 911 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 PXMP4Q9Y6I8 212 aa10.95□□□□□ -0.66
SDC3-201ENST00000336798 OGG1O15527 345 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 GAPDHP04406 335 aaKnown RBP10.94□□□□□ -0.66
SDC3-201ENST00000336798 SAMD13Q5VXD3 122 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 FGF11Q92914 225 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 DMRTA2Q96SC8 542 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 PRSS27Q9BQR3 290 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 PIMREGQ9BSJ6 248 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 ISXQ2M1V0 245 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 RFLNBQ8N5W9 214 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 PGA4P0DJD7 388 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 PGA5P0DJD9 388 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 PCMT1P22061 227 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 PSG4Q00888 419 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 ZNF343Q6P1L6 599 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 CENPVQ7Z7K6 275 aaPredicted RBP10.94□□□□□ -0.66
SDC3-201ENST00000336798 SLC25A42Q86VD7 318 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 A0A0J9YW62 118 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 PRSS2P07478 247 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 CKS2P33552 79 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 C2orf83Q53S99 150 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 F11RQ9Y624 299 aaKnown RBP10.94□□□□□ -0.66
SDC3-201ENST00000336798 PSMB11A5LHX3 300 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 TMEM229AB2RXF0 380 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 ATP5J2P56134 94 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 KLRB1Q12918 225 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 UBE2V2Q15819 145 aa10.94□□□□□ -0.66
SDC3-201ENST00000336798 BEX4Q9NWD9 120 aaPredicted RBP10.94□□□□□ -0.66
SDC3-201ENST00000336798 ELF5Q9UKW6 265 aaPredicted RBP10.94□□□□□ -0.66
SDC3-201ENST00000336798 KBTBD11O94819 623 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 SCTP09683 121 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 ATP6V0CP27449 155 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 RBM11P57052 281 aaKnown RBP10.93□□□□□ -0.66
SDC3-201ENST00000336798 FXYD3Q14802 87 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 WDR25Q64LD2 544 aaPredicted RBP10.93□□□□□ -0.66
SDC3-201ENST00000336798 CCL19Q99731 98 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 FOXC2Q99958 501 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 HSPB7Q9UBY9 170 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 IGKV1D-16P01601 117 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 HOXB1P14653 301 aaPredicted RBP10.93□□□□□ -0.66
SDC3-201ENST00000336798 SPATA45Q537H7 98 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 PITPNC1Q9UKF7 332 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 KIAA0100Q14667 2235 aaKnown RBP10.93□□□□□ -0.66
SDC3-201ENST00000336798 PQLC2LA1A4F0 135 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 FCGR3AP08637 254 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 TMPRSS3P57727 454 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 MEIG1Q5JSS6 88 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 CD300LDQ6UXZ3 194 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 PHLDA3Q9Y5J5 127 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 S4R3C0 116 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 OR2H2O95918 312 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 GALP22466 123 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 OR13C6PQ8NH95 151 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 LINC00869P0C866 280 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 TTC32Q5I0X7 151 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 VKORC1L1Q8N0U8 176 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 MRAP2Q96G30 205 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 CHST5Q9GZS9 411 aa10.93□□□□□ -0.66
SDC3-201ENST00000336798 DUSP15Q9H1R2 295 aaPredicted RBP10.93□□□□□ -0.66
SDC3-201ENST00000336798 A0A1W2PPV9 198 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 A0A1W2PRX2 142 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 NDUFB4O95168 129 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 MARVELD1Q9BSK0 173 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 TMEM56-RWDD3S4R434 201 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 IGHV3-49A0A0A0MS15 119 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 PGPA6NDG6 321 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 HMSDA8MTL9 139 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 SLC25A17O43808 307 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 SFTPCP11686 197 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 DLX6P56179 175 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 A0A0B4J293 547 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 NPIPB6E9PJ23 425 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 HSPB1P04792 205 aaKnown RBP10.92□□□□□ -0.66
SDC3-201ENST00000336798 CTSSP25774 331 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 FAM3BP58499 235 aaPredicted RBP10.92□□□□□ -0.66
SDC3-201ENST00000336798 CX3CL1P78423 397 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 ZNF56Q15929 161 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 PEAR1Q5VY43 1037 aaPredicted RBP10.92□□□□□ -0.66
SDC3-201ENST00000336798 MRGPRGQ86SM5 289 aa10.92□□□□□ -0.66
SDC3-201ENST00000336798 NFAM1Q8NET5 270 aaPredicted RBP10.92□□□□□ -0.66
SDC3-201ENST00000336798 RAB24Q969Q5 203 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms