RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 HLA-GP17693 338 aa8.79□□□□□ -1
CHD3-201ENST00000330494 GRAMD2BQ96HH9 432 aa8.79□□□□□ -1
CHD3-201ENST00000330494 SPSB2Q99619 263 aa8.79□□□□□ -1
CHD3-201ENST00000330494 C9orf172C9J069 976 aa8.78□□□□□ -1
CHD3-201ENST00000330494 CLEC2AQ6UVW9 174 aa8.78□□□□□ -1
CHD3-201ENST00000330494 STARD4Q96DR4 205 aa8.78□□□□□ -1
CHD3-201ENST00000330494 PARD6GQ9BYG4 376 aaPredicted RBP8.78□□□□□ -1
CHD3-201ENST00000330494 IGLV1-36A0A0B4J1U3 117 aa8.78□□□□□ -1
CHD3-201ENST00000330494 CXorf65A6NEN9 183 aa8.78□□□□□ -1
CHD3-201ENST00000330494 REG1AP05451 166 aa8.78□□□□□ -1
CHD3-201ENST00000330494 KRTCAP3Q53RY4 240 aa8.78□□□□□ -1
CHD3-201ENST00000330494 COL5A1-AS1Q5SY13 56 aa8.78□□□□□ -1
CHD3-201ENST00000330494 OR1L1Q8NH94 360 aa8.78□□□□□ -1
CHD3-201ENST00000330494 VSTM2AQ8TAG5 236 aa8.78□□□□□ -1
CHD3-201ENST00000330494 LPAR3Q9UBY5 353 aa8.78□□□□□ -1
CHD3-201ENST00000330494 LINC00862A6NCI5 91 aa8.78□□□□□ -1
CHD3-201ENST00000330494 PAGE4O60829 102 aa8.78□□□□□ -1
CHD3-201ENST00000330494 SEMA7AO75326 666 aa8.78□□□□□ -1
CHD3-201ENST00000330494 VSIG10L2P0DP72 767 aa8.78□□□□□ -1
CHD3-201ENST00000330494 CTSSP25774 331 aa8.78□□□□□ -1
CHD3-201ENST00000330494 LY6EQ16553 131 aa8.78□□□□□ -1
CHD3-201ENST00000330494 RNFT1Q5M7Z0 435 aa8.78□□□□□ -1
CHD3-201ENST00000330494 ZNF385CQ66K41 422 aaPredicted RBP8.78□□□□□ -1
CHD3-201ENST00000330494 OR8I2Q8N0Y5 310 aa8.78□□□□□ -1
CHD3-201ENST00000330494 A0A0U1RQV5 110 aa8.78□□□□□ -1
CHD3-201ENST00000330494 PLAUP00749 431 aa8.78□□□□□ -1
CHD3-201ENST00000330494 SULT1A1P50225 295 aa8.78□□□□□ -1
CHD3-201ENST00000330494 RAG2P55895 527 aa8.78□□□□□ -1
CHD3-201ENST00000330494 SLC25A53Q5H9E4 307 aa8.78□□□□□ -1
CHD3-201ENST00000330494 PRSS3P2Q8NHM4 247 aa8.78□□□□□ -1
CHD3-201ENST00000330494 ZNF519Q8TB69 540 aa8.78□□□□□ -1
CHD3-201ENST00000330494 SEC11CQ9BY50 192 aa8.78□□□□□ -1
CHD3-201ENST00000330494 TCF20Q9UGU0 1960 aaKnown RBP8.78□□□□□ -1
CHD3-201ENST00000330494 TGFBR3LH3BV60 316 aa8.78□□□□□ -1
CHD3-201ENST00000330494 IGHV3-48P01763 117 aa8.78□□□□□ -1
CHD3-201ENST00000330494 NPY1RP25929 384 aa8.78□□□□□ -1
CHD3-201ENST00000330494 KIF26BQ2KJY2 2108 aa8.78□□□□□ -1
CHD3-201ENST00000330494 DCAF12L2Q5VW00 463 aa8.78□□□□□ -1
CHD3-201ENST00000330494 C10orf113Q5VZT2 155 aa8.78□□□□□ -1
CHD3-201ENST00000330494 ZNF600Q6ZNG1 722 aa8.78□□□□□ -1
CHD3-201ENST00000330494 VKORC1L1Q8N0U8 176 aa8.78□□□□□ -1
CHD3-201ENST00000330494 DYNLRB2Q8TF09 96 aa8.78□□□□□ -1
CHD3-201ENST00000330494 SIRT7Q9NRC8 400 aa8.78□□□□□ -1
CHD3-201ENST00000330494 FUT9Q9Y231 359 aa8.78□□□□□ -1
CHD3-201ENST00000330494 K7N7A8 449 aa8.78□□□□□ -1
CHD3-201ENST00000330494 VDAC1P21796 283 aa8.78□□□□□ -1
CHD3-201ENST00000330494 DLK1P80370 383 aa8.78□□□□□ -1
CHD3-201ENST00000330494 ELOBQ15370 118 aa8.78□□□□□ -1
CHD3-201ENST00000330494 HOGA1Q86XE5 327 aa8.78□□□□□ -1
CHD3-201ENST00000330494 AHCTF1Q8WYP5 2266 aa8.77□□□□□ -1
CHD3-201ENST00000330494 ZNF716A6NP11 495 aa8.77□□□□□ -1
CHD3-201ENST00000330494 FGF12P61328 243 aa8.77□□□□□ -1
CHD3-201ENST00000330494 TMEM255AQ5JRV8 349 aa8.77□□□□□ -1
CHD3-201ENST00000330494 C16orf82Q7Z2V1 217 aa8.77□□□□□ -1
CHD3-201ENST00000330494 FAM216AQ8WUB2 273 aa8.77□□□□□ -1
CHD3-201ENST00000330494 TP53RKQ96S44 253 aa8.77□□□□□ -1
CHD3-201ENST00000330494 CRXO43186 299 aaPredicted RBP8.77□□□□□ -1.01
CHD3-201ENST00000330494 ZIC3O60481 467 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 MGPP08493 103 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 FAM157CP0CG43 387 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 CRISP2P16562 243 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 RUNX1Q01196 453 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 MRPS18AQ9NVS2 196 aaKnown RBP8.77□□□□□ -1.01
CHD3-201ENST00000330494 IZUMO4Q1ZYL8 232 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 PPP1R32Q7Z5V6 425 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 TMEM105Q8N8V8 129 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 KLF14Q8TD94 323 aaPredicted RBP8.77□□□□□ -1.01
CHD3-201ENST00000330494 OR5AC2Q9NZP5 309 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 HMSDA8MTL9 139 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 UCNP55089 124 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 TCTAP57738 103 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 ATP6V1FQ16864 119 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 PRNTQ86SH4 94 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 C5orf17Q8NAS9 161 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 OPN4Q9UHM6 478 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 C7orf77A4D0Y5 90 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 CDK2AP1O14519 115 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 DNPH1O43598 174 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 CRYBA2P53672 197 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 GABRA6Q16445 453 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 LINC00518Q8N0U6 118 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 OR5AU1Q8NGC0 362 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 Q8WTZ3 238 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 GUCD1Q96NT3 240 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 TECRQ9NZ01 308 aaKnown RBP8.77□□□□□ -1.01
CHD3-201ENST00000330494 SMAD7O15105 426 aaKnown RBP8.77□□□□□ -1.01
CHD3-201ENST00000330494 ARF6P62330 175 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 PRB3Q04118 309 aaPredicted RBP8.77□□□□□ -1.01
CHD3-201ENST00000330494 EGR4Q05215 589 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 TBX15Q96SF7 602 aa8.77□□□□□ -1.01
CHD3-201ENST00000330494 SFTPCP11686 197 aa8.76□□□□□ -1.01
CHD3-201ENST00000330494 CD99P14209 185 aa8.76□□□□□ -1.01
CHD3-201ENST00000330494 IFITM3Q01628 133 aa8.76□□□□□ -1.01
CHD3-201ENST00000330494 LYRM7Q5U5X0 104 aa8.76□□□□□ -1.01
CHD3-201ENST00000330494 SCARF2Q96GP6 870 aaPredicted RBP8.76□□□□□ -1.01
CHD3-201ENST00000330494 TIMP4Q99727 224 aa8.76□□□□□ -1.01
CHD3-201ENST00000330494 A0A0G2JMZ2 1700 aa8.76□□□□□ -1.01
CHD3-201ENST00000330494 LRRC37A2A6NM11 1700 aa8.76□□□□□ -1.01
CHD3-201ENST00000330494 RHBDL1O75783 438 aa8.76□□□□□ -1.01
CHD3-201ENST00000330494 ACSF3Q4G176 576 aaPredicted RBP8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms